Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961906
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Entry
101961906 CDS
T10664
Symbol
Dhx57
Name
(RefSeq) putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
iti03012
]
101961906 (Dhx57)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101961906 (Dhx57)
Translation factors [BR:
iti03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101961906 (Dhx57)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
RWD
DEAD
Helicase_C
HA2_C
HA2_N
zf-CCCH_4
zf-CCCH
zf_CCCH_4
Torus
nSTAND3
AAA_19
zf-CCCH_2
AAA_14
AAA_22
NB-ARC
NPHP3_N
ATPase_2
ResIII
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
101961906
NCBI-ProteinID:
XP_040127051
LinkDB
All DBs
Position
Unknown
AA seq
1386 aa
AA seq
DB search
MSSSVRRKGKPGKGGGKGSSKGGRGSRSHTNKPHGSGGSGGGGGSGVGGNRKASSRIWDD
GDDFCIFSESKHSSRPSNSSISKGEARPKWKPKAKVPLQTLHMTSENQEKVKALLRDLQE
QDADAGSERGISGEEEDDEPDCLDDEQYWSAGQEPSLAPDSDPWEYAGSGPVEPHIPEFT
VSPFAVQKLSRYGFNIEHCQAALRICDGDLGASLEHLLIQCFSETFGERMKISEAARHAS
LDECVEQRQEEALALRSICGEKFIERIQNRVWTIGLELEYLTSKFCKSKQKESKNVREAS
PETCKFYLKGNCKFGSKCKFKHEVPPNQIVGRVERIVDDSHLNANEDASFLYELEIRFSK
DHRYPYQAPLVAFYSTNENLPLACRLHISEFLYGKALTLSETSEPVVYSLITLLEEESEI
VKLLTNTHHKYSVPPVNFLPVSSGTRINNPACRKPMIPNHYFVSSQISEVGKESEPEEEA
EEDEGSAPVIVENESYVNLKKKISKRYDWQAKSVYTENSKICKQFRMKQASRQFQSVLQE
RQSLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDDSLSGPPEKVANIICTQ
PRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDTTLQ
GVTHIIVDEVHERTEESDFLLLVLKDIVLQRPTLQVILMSATLNAELFSEYFNSCPVITI
PGRTFPVDQFFLEDAVAVTRYVLQDGSPYMRSMKQIAKEKLKARRNRTAFEEVEEDLRLS
LHLQDQDSVKDAVPDQQLDFKQLLARYKGVSKSVIKTMSIMDFEKVNLELIEALLEWIVN
GKHSYPPGAILVFLPGLAEIKMLYEQLQSNSLFNNRRSNRCVIHPLHSSLSSEEQQAVFV
KPPVGITKIIISTNIAETSITIDDVVYVIDSGKMKEKRYDASKGMESLEDTFVSQANALQ
RKGRAGRVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSV
FSRLIEPPHADSLRASKIRLRDLGALTPDEKLTPLGYHLASLPVDVRIGKLMLFGSIFRC
LDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFANSDYLALLQAYKGWQLSTKEGAR
ASYNYCRQNFLSGRVLQEMASLKRQFTELLSDIGFVKEGLRAREIEKRAQGGDGVLDATG
EEANSNAENPKLISAMLCAALYPNVVQVKTPEGKFQKTSSGAVRMQPKSAELKFVTKNDG
YVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRIFIRDCSMVSVYPLVLFGGGQVNVQLQRG
EFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNPSIDLCTCPRGSRIISTIV
KLVTTQ
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttcagtaagaagaaaaggcaagccaggcaaaggaggtggaaaaggatcttct
aaaggaggaagaggaagcaggagtcatactaataaacctcatggaagtggtggcagtggc
ggtggtggtggcagtggtgttggtggcaacagaaaggcctcaagtagaatttgggatgat
ggagatgacttttgtatcttcagtgaatcaaagcattcatccagacctagcaacagtagc
ataagcaagggagaggctcgccctaaatggaagcccaaagccaaagtaccccttcagact
ctacatatgacctctgagaatcaagagaaagtaaaagctcttctgcgagacctgcaagaa
caagatgcggatgctggatctgaaagaggaatttctggggaggaggaagatgatgagcct
gattgtcttgatgatgagcagtactggtcagctggacaagaaccttcccttgctccggac
tctgatccttgggaatatgcaggctctggcccagttgagcctcatattccagaatttaca
gtctcaccatttgcagtgcaaaaactttccaggtatggcttcaacattgaacactgtcaa
gcagctctgaggatttgtgatggagatttgggggcatcactagagcatctgctcatccag
tgtttttcagaaacatttggagaaaggatgaaaatctctgaggcagctaggcacgcaagc
ttggatgaatgtgtggagcagcgacaggaagaggcacttgctctcaggtcaatttgtgga
gaaaaatttatagaaagaattcagaacagggtctggaccattggattggaactggaatat
ttgacaagtaaattctgcaaatccaagcaaaaggaaagcaaaaatgtgcgagaggcatca
cctgaaacctgtaaattttacctaaaaggaaattgtaaatttggatcaaaatgcaaattc
aaacatgaagtgcccccaaatcaaattgttggacgagtagaaagaattgtagatgattct
catcttaatgctaatgaagatgcatcttttttatacgagcttgaaatccgattttctaaa
gaccacaggtacccctaccaagctccccttgtggcattttattccaccaatgagaatcta
cctctggcttgtcgtttacatatttctgaattcctttatggcaaagccttgacactttca
gaaacttcagaacctgttgtatattctttgataaccctgttagaggaagaatcagaaatt
gtcaagttactgacaaatacccatcacaagtatagtgtccctcctgtgaattttctgcca
gtatcctctgggaccagaataaataatccagcctgtcgtaaaccaatgattccaaatcat
tattttgtttcaagtcaaatatcagaagttggaaaagaatcagaacctgaggaggaggca
gaagaggatgaaggttcagcaccagttatagtggagaatgaaagctatgtgaaccttaag
aaaaagatttccaaaagatatgactggcaggcaaaatcagtatatactgaaaatagtaaa
atctgcaagcagttccggatgaaacaggcttccagacagttccagtcagttctacaagaa
aggcagtcactccctgcatgggaagaaagagaaaccattcttaaattgctgagcaagcac
caagtggttgttataagtggtatgactggatgtgggaaaaccacacagattccacagttt
attctggatgattctctgagtgggccacctgaaaaagtggctaacatcatctgtacccaa
ccccgacgaatctctgcaatctctgttgctgaacgagttgctaaagaaagagcagaaagg
gtgggtctgaccgtgggatatcagattcggttagaaagtgtcaagtcttcagccaccaga
ctgttatactgcaccacaggagtgctgctgagaaggctagaaggagatacaactctccag
ggagttacccatatcattgttgatgaagttcatgagaggacagaagaaagtgacttctta
ctgctagttttgaaggacattgtgttgcagaggccaactcttcaagttattctaatgagt
gcaactttaaatgctgaactcttttcagaatatttcaattcctgcccagttattactata
ccaggtcgtacatttcctgttgatcagttttttctggaagatgcagttgctgtgacaaga
tatgtgttacaggatgggagcccatatatgcgctccatgaaacagattgcaaaggaaaaa
cttaaagcaagacgcaacagaactgcatttgaagaagtagaggaagacctgaggctgtct
cttcacctccaggatcaggattctgtcaaagatgcagtgccagatcaacagttagatttt
aagcagctcctggcccgctataaaggggtcagcaaatcagtcatcaaaacaatgtccatt
atggattttgaaaaggttaatcttgaattaatagaggccttgttagagtggattgtgaat
ggaaagcactcctatcctccaggtgctatacttgtatttctaccaggactagcagaaatc
aaaatgctttatgaacagttacagtctaattctctttttaacaatcgacgtagtaatcga
tgtgttattcaccctcttcactcatctttatccagtgaagagcaacaggctgtatttgta
aaacccccagtgggtataaccaagattataatttccaccaacattgctgagacttccata
accattgatgatgttgtctatgtcattgattctgggaaaatgaaagaaaagagatatgat
gccagcaaagggatggaaagtctagaggatacttttgtatctcaagcaaatgccctgcaa
agaaagggtcgagccggccgggttgcatctggggtctgcttccatttatttactagtcat
cactacaaccaccagcttttaaagcagcagctaccagaaatacaaagagtgccattggaa
cagctgtgtctaagaattaaaattttagagatgtttagcactcataatctacaatctgtg
ttctctcggctcattgaacctccacatgctgattctctccgtgcctcaaaaatacgatta
cgagacttgggagcattaactccagatgaaaaattgacccctctaggatatcatttggcc
tctctgcctgtggatgtgagaatcggcaaactgatgctatttgggtctatcttccgctgt
ttggatcctgctctcaccattgctgccagcttggcctttaaatcaccttttgtgtctccc
tgggataaaaaagaagaagccaaccagaaaaagctggaatttgcatttgcaaacagtgac
tatctggcccttctgcaagcatacaaggggtggcaactgagtacaaaagaaggtgcgcgt
gcaagttataattactgcagacaaaacttcttgtcaggaagagttctgcaggaaatggcc
agcctcaaacgacaattcactgaactattatcggatatagggtttgtaaaggagggactc
agagcaagggaaattgagaaaagggcccaaggaggagatggtgtcctagatgccacagga
gaagaggcaaactcaaatgctgagaaccccaagctgatatcagcaatgctatgtgctgct
ctttatccaaatgtagtgcaggtgaagaccccggaaggaaaatttcagaagaccagcagt
ggtgctgtcagaatgcaaccaaaatcagctgagttgaagtttgtgacaaagaatgatgga
tatgtacacatccacccttcctctgtgaactatcaggtcagacattttgacagcccctat
ctgttgtaccatgagaaaatcaaaacaagtcggatattcatccgtgactgcagcatggta
tctgtgtacccactggtcttgtttggaggaggccaagtgaatgtgcagcttcaaagagga
gagttcgtggtctccttggatgatggctggatccgttttgtagctgcttctcatcaggtg
gctgaattagtaaaggaacttcgttgtgaacttgaccagctcctccaggataaaattaaa
aacccaagcatagacttgtgtacctgtcctagaggctcccggatcatcagcacaattgtg
aaacttgtcaccacacaataa
DBGET
integrated database retrieval system
