Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101961919
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Entry
101961919 CDS
T10664
Symbol
Ddx10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
iti03009
]
101961919 (Ddx10)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101961919 (Ddx10)
Ribosome biogenesis [BR:
iti03009
]
Eukaryotic type
90S particles
Helicases
101961919 (Ddx10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
PAS_11
DUF2390
Motif
Other DBs
NCBI-GeneID:
101961919
NCBI-ProteinID:
XP_040141105
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MRLGASSPRWFCELCRTSTWSLGISCLSSVQAVAAATMGKTADSLSQGTRSDPVRSFNRW
KKKHSHRQNQKKQLRKQLKKPEWQVEREGISRLIQNYEKINVNEITRFSDFPLSKKTLKG
LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG
VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQ
HMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDL
ARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSC
KEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPA
VNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMVQQLLQKKVPVKEIKI
NPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKEVFDVNKLPIPEYALSL
GLAVAPRVRFLQKVQKQSTKELVKSQGNVVTEPRAPSLTNDEVEEFRAYFNEKMSILQKG
GKRLQETENRQNSDVSEEDGDDDDDDEEEEMKEKLGKARGSETQSHPNMETQKVKEVSVQ
FLDRDDEEEDGPDNDFLTVKRCNVFGLNLSENKVLQKKEPSKSSVKKKVTKVAEAKKVMK
RNFKVNKKITFTDEGELVQQWPQMQKSTMNDKEEEDDTGGINLDKAKERLQEEDKFDKEE
YRKKIKAKHREKRLKEREARREANKRQAKAKEEEEAFLDWSDDDDDGFDPSTLPDPDKYR
SSEESDSEDMENKISDTKKKQEMKKRNNSEVEDVGPTSHHRKKAKWETLEPLDTGLSLAE
DEELVLHLLKNQS
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcggtgcgtcttccccacgctggttctgtgaactctgccgcacctccacctgg
tctttagggatctcgtgtttgagctctgtccaggctgtagccgccgccacgatgggcaaa
actgctgactctctgagtcagggaacccgatccgacccggtgcggagcttcaatcgctgg
aagaaaaaacacagccatagacagaaccaaaagaagcagttgaggaagcagctgaagaag
cccgagtggcaggtcgaacgtgaaggcatcagccgccttatacagaactatgagaagata
aatgtaaatgaaattacaagattttcagatttccccttgtctaaaaaaacattgaaaggt
ttgcaagaagcccagtaccgcttggtaactgagatacagaagcagaccatagggttggct
ttgcaaggtaaagatgtacttggagctgccaaaactggatctggcaagactttggctttt
cttgttccagtgttggaagccttataccgtctgcagtggacctcaactgatgggctgggt
gttctgataatatcacctacacgagaactggcatatcagacctttgaggtactccgaaaa
gtaggaaagaaccatgacttctcagcgggtctcatcattggtggaaaggatctgaaacat
gaagctgagaggatcaacaacataaatatactcgtttgcacaccaggtcggcttctgcaa
cacatggatgaaacaatatgttttcatgccaccaatctccaaatgttagttcttgatgaa
gcagacagaatattggatatgggctttgctgatactatgaatgctattattgaaaatctt
cccaagaaacgtcagactttacttttctcagcaacacaaactaaatcagtaaaggacctt
gcacgcttgagcttgaaaaaccctgagtatgtatgggttcatgaaaaagcaaaatacagc
acccctgctactttggaacagaactacatagtttgtgagctgcaacaaaaaataagtgtg
ctgtattcctttttgagaagtcatctgaagaagaagagtattgtgtttttctctagttgc
aaagaggttcagtacctgtaccgagttttctgccggcttcgccctggtatttctatcctt
gctctccatggtcgacaacaacagatgagaagaatggaagtctataatgagtttgtccga
aagagagctgcagtactctttgctacggatattgcagccagggggctggattttccagct
gtaaattgggttcttcagtttgattgtccagaggatgccaacacatatattcacagagca
ggtagaactgccaggtacaaagaggatggtgaagctttattaattttgcttccctcagaa
gaaaaagggatggtgcaacaacttctccagaaaaaagtacctgtgaaggaaatcaaaatc
aatccagaaaaacttatagatgtacagaaaaaattggaatcttttttagcccaagatcaa
gatttaaaagaaagagctcaaaggtgttttgtctcctatatacgttcagtataccttatg
aaggataaagaagtatttgatgtgaacaaattacctattcctgaatatgcactgtctctt
gggcttgctgtggcaccacgggtaagatttcttcagaaagtgcagaaacaatctaccaaa
gagttggtgaagagtcaaggcaatgtggtaactgagcccagggctccatctctcaccaat
gatgaggtggaagaatttagagcctatttcaatgagaaaatgtccatccttcagaaaggt
gggaaaagactacaagagacagagaatagacagaatagtgatgttagtgaagaggatggt
gatgatgatgatgatgatgaagaagaagaaatgaaagagaaactgggaaaagcaagaggg
tctgaaactcaatctcatcccaacatggagacacagaaggtcaaggaagtttctgtgcag
ttcttggaccgagatgatgaggaagaagatggacctgataatgatttccttacagtgaaa
cggtgcaatgtgtttgggttgaatctttcagagaataaagtgttacagaagaaagaacct
tctaaatccagtgtcaagaaaaaagtaaccaaagtggcagaagcaaaaaaagtaatgaag
agaaattttaaagtgaataagaaaataacatttactgatgaaggggagttggttcagcag
tggccacagatgcagaaatccaccatgaatgataaggaggaggaggatgacactggtggt
atcaacttagataaagcaaaggaaaggcttcaggaagaggacaaatttgacaaagaagaa
tataggaagaaaattaaggcaaagcatcgggagaagagactgaaagaaagggaagccaga
agagaagccaacaagagacaagcaaaggccaaagaggaagaggaagcctttctggattgg
agtgatgatgatgatgatggatttgatccgagcacacttccagatccagataaatacaga
agctctgaagaatcagatagtgaagacatggaaaataaaattagtgataccaagaagaag
caggaaatgaagaaaaggaacaacagtgaagtggaagatgtgggaccaacaagtcatcat
agaaagaaggccaagtgggaaaccttagagcctttggatacaggcctgtctttagcagag
gatgaagagctggtgttgcatctactcaaaaatcaaagctaa
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