Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101962241
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Entry
101962241 CDS
T10664
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101962241 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101962241 (Edc4)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101962241 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
101962241 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EDC4L
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_TEP1_2nd
DUF445
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
101962241
NCBI-ProteinID:
XP_005318391
UniProt:
I3M1D5
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGPSAESQRSSSAYNGDLNGLLVPDPLCSGDGTS
TSKPGLRIIPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALINSKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGAEGSHGAGTMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFAFGESRPELGSEGLGSTTHGSQPDLRRIVELPAPADFLTLSSETKPKLMTPDAFMT
PTASLQQITASPSSSSSSSSSSSSSSSSSSSSSLTAVSAVSSTSAVDPSLPRPPEELTLS
PKLQLDGSLTMSNSSSLQASPRSLLPSLLPGPGDKLTPKGPGQVSATASALSLELQEVEP
LGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSASEGLEPDSMASAASAL
HLLSPRPRPGPELGPQLGLDGGPGDGDRHSTPSLLEAALTQEAAPADSQVWPTAPDITRE
TCSTLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLAAASGGFG
TKIPTPRLPAKDWKTKGSPRTSPKIKRKSKKDDGDSAMGSRLTEHQVAEPPEDWPALIWQ
QQRELVELRHSQEELLQRLCAQLEGLQNTVTGHVERALETRHEQEQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSALAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTA
VEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLISTLQSATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPS
AHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQP
VLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAE
PHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcggggggccccagtgcagagagccagcggtcatctagtgcctat
aatggggacctcaatgggctcctggtaccagaccccctctgctcaggtgatggtacctca
acaagtaagcctggtctgcggatcataccacccattaacctgcaagagaaacaggtcatc
tgcctttctggagatgacagctccacctgcattgggattttggccaaggaggtagagatt
gtggccagcagtgactctagcatttcaagcaaggcacgggggagcaacaaggtgaaaatc
cagcctgttgccaagtacgactgggagcagaagtactactatggcaacctaattgctgtg
tccaactctttcttagcctatgccattcgtgctgccaacaatggctcagcaatggtgcga
gtgatcagtgtcagcacttcagagcggaccctacttaagggcttcacaggcagtgtggct
gatctggcctttgcacacctcaactctccacagctggcttgcctggatgaggcaggcaat
ctgtttgtgtggcgcttggctctgattaacagcaaaattcaagaagagatcttggtccat
atccggcagccagagggcacgccactgaaccacttccgaaggatcatctggtgccccttt
attcctgaggaaagtgaggactgctgtgaggagagtagcccaacagtggccctgctgcat
gaagaccgggctgaggtgtgggacctggatatgctccgctccagccatagcacgtggcct
gttgatgtcagccaaatcaagcaggggttcattgtggtaaaaggccacagcacgtgtcta
agtgaaggagccctctctcctgacgggactgtcctagctactgcaagtcatgatggctat
gtcaagttctggcagatctacattgaggggcaggatgagccacggtgtctacatgagtgg
aagcctcatgatgggcggcccctctcctgcctccttttctgtgacaatcataagaaacag
gaccctgaggtcccattctggaggttcctcattactggtgctgaccagaatcgggagtta
aagatgtggtgcacagtgtcctggacctgcctacagaccattcgcttctccccagatatc
ttcagctcagtgagtgtgccccccagtctcaaagtttgcttagacctctcagcagaatac
ttgattctcagtgatgtacaacgaaaggtcctatatgtgatggagctgctgcagaaccag
gaggaaggccgtgcctgcttcagctccatttcagagttcctgcttacccaccctgtgctg
agctttggcatccaggttgtgagtcgttgccggctgcggcacactgaagtgctgcctgct
gaggaggaaaatgatagcctgggggctgagggttctcatggagctggtaccatggagtct
gcagctggtgtactcatcaagctcttttgtgtgcatactaaggccttgcaagatgtacag
atccgtttccagccacagctgaaccctgatgtggtggccccactccccactcacactgcc
catgaggactttgcctttggagagtctcggcctgaactgggctctgagggcctgggatca
accactcacggctcccagcctgacctccgacgcattgtggagctgcctgcacctgctgac
ttcctcaccctgagcagtgaaaccaaacccaagttgatgacacctgatgcctttatgaca
cccactgcctccttgcagcagatcactgcatcccctagcagcagcagcagtagcagcagc
agtagcagcagcagcagcagcagcagcagcagcagctctcttacagctgtgtctgctgtg
agtagcacctcagctgtggatccctccttgcccaggccacctgaagagttgaccttgagc
cccaaattgcagctggatggcagtctgacaatgagcaacagcagcagcctgcaggcaagc
ccacgcagcctcttgcccagcctgctcccaggcccaggcgataaattgactcccaaaggg
cccgggcaggtatctgctactgcctctgcactgtccctggagttacaggaagtggagcct
ttggggctaccccaggcctcccccagtcgtacccgctcccctgatgttatctcctcagct
tctactgccctgtcccaggatattcctgagatcgcatctgaggccctgtcacgtggcttt
ggctcctcggcctctgagggccttgagccagacagtatggcctcagctgcctcagcacta
cacctactatccccacggccccggccaggacccgagcttggcccccaacttggcctggat
ggaggccctggggatggggatcgacatagtaccccctcactcctggaagcagccttgacc
caggaggctgcccctgctgacagtcaggtctggcctacggcacctgacattactcgggag
acctgtagtaccctggcagagagccccagaaatggcctccaggaaaagcataaaagcttg
gccttccaccgaccaccttatcacctgctacagcaacatgatagccaggacaccagtgct
gaacaaagtgaccatgatgatgaggtagccagtcttgctgctgcctcaggaggctttggc
accaaaattcctactccccgcctgcctgccaaggactggaagaccaagggatcacctcgg
acctcacccaagatcaagagaaaaagcaagaaggatgatggggattcagccatgggatcc
cggctcacagagcaccaggtggcagagcctcctgaagactggccagcactaatttggcag
cagcagagagaattggtagagctgcgtcacagccaagaagagctgcttcagcgtctgtgt
gcccaacttgaaggcctgcagaacactgtcacaggccatgtagaacgtgcccttgagacc
cggcatgagcaggaacaacggcgtctagagagggcactggctgaggggcagcagcggggt
gggcaactgcaggagcagctgacacaacagctgtcccaagcactatcttctgctttggct
gggcggttggaacgtagcatacgagatgagattaaaaaaacagttcctccatgtgtctcc
aggagtctagagcctgtagcaggccagctgagcaattcagtggctaccaagctcacagct
gtagagggcagcatgaaagagaacatctccaagctactcaagtccaagaatttgacagat
gctatcgcccgagcagctgcagacacattacaggggccaatgcaggctgcctaccgtgaa
gccttccagagcgtggtgctgcctgccttcgaaaagagctgccaggccatgttccagcaa
atcaatgatagcttccggctgggcacacaggaatacttgcaacagctagagagccacatg
aagagccggaaggcacgggaacaggaggccagagagcctgtgcttgcccagcttcggggc
ctgatcagcacactgcagagtgccactgagcaaatggcagccactgtatctagcagtgtt
cgggctgaagtacagcaccagctgcacgtggctgtgggcagcctgcaggagtcaatttta
gcacaggtacagcgcattgttaagggtgaggtgagtgtggcgctcaaggaacagcaggct
gccgtcacctccagtatcatgcaggccatgcgttcagctgctggcacacctgtcccctct
gcccacctcgactgccaggcccagcaagcccatattttgcagctcttgcagcagggccac
ctcaatcaggccttccagcaggcgctgacagctgctgacctaaacctggtgctgtatgta
tgtgaaacggtggacccagcccaggtttttgggcagccgccttgcccactctcccagcct
gtgctcctttccctcatccagcagctggcatctgaccttggcactagaactgacctcaaa
ctcagctacctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgagac
cacatgggctccgtcatggctcaagtgcgccagaagctatttcagtttctgcaggctgag
ccacacaactcattgggcaaagcagcccggcgtcttagcctaatgctgcatggccttgtt
acccccagcctcccttag
DBGET
integrated database retrieval system
