Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101962492
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Entry
101962492 CDS
T10664
Symbol
Prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101962492 (Prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101962492 (Prpf4)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101962492 (Prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
PRP4
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
101962492
NCBI-ProteinID:
XP_005329746
UniProt:
A0A287CUJ8
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MASSRASSTAPKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIE
AGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
DSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTISLDQKDVNLASCAA
DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcacgagcctcctccacggcacccaaaactaaggcacccgatgacttagtg
gctcctgttgtgaagaaaccacacatctattatggaagtttggaagagaaggagagagaa
cgtctggccaaaggagagtctggcattttgggtaaagaaggactgaaagcaggaattgaa
gcaggaaatattaatataacctctggagaagtatttgaaattgaagagcatatcagtgaa
cggcaggcagaagtattggctgagtttgaaagaaggaagagagcccggcaaatcaatgtt
tccacagatgactcagaggtcaaggcttgccttagagccttaggggaacccattacactt
tttggagagggccctgctgaaagaagagaaagattaagaaatatcctctcagtggttggt
actgatgccttaaaaaagacaaaaaaagatgatgagaaatctaagaagtccaaagaagag
tatcagcaaacctggtaccatgaaggaccaaatagcctgaaggtggccaggctgtggatt
gctaattattcactgcccagggcaatgaaacgcttggaagaggcccgtctccataaagag
attcctgaaacaactaggacctcccagatgcaagagctgcacaaatctctccggtctctg
aataacttctgcagtcagattggggatgatcggcctatctcctactgtcactttagtcct
gattccaaaatgctggccacagcttgttggagtgggctttgcaagctctggtctgttcct
gattgcaacctccttcacacacttagaggccataacacaaatgtaggcgcaattgtattc
catcccaagtctacaatctcattggaccaaaaagatgttaacctggcctcttgtgctgct
gatggttctgtgaaactttggagtcttgacagtgatgaaccagtggcagatattgaaggc
cacacagtacgtgtggcccgagtgatgtggcatccatcaggacgtttcctgggcactacc
tgctatgaccgttcatggcgcttatgggatttggaagctcaagaagagatcctgcatcag
gaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttggctggc
actgggggactggatgcatttggtcgtgtttgggacctacgcacaggacgttgtatcatg
ttcctagaaggccacctgaaggaaatctatggaataaatttctcccccaatggctaccac
attgcaactggcagtggtgacaacacttgcaaagtgtgggacctacgacaacgacgatgc
gtgtataccatccctgcccatcagaatttagtgactggagtcaaatttgaacctatccat
gggaacttcttgctcactggtgcctatgataacacagccaagatctggacccacccaggc
tggtccccattgaagactctggctggccatgaaggcaaagtgatgggtctagacatttct
tctgatggacagcttatagccacctgctcatatgacaggaccttcaagctctggatggct
gaatag
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integrated database retrieval system
