Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101962871
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Entry
101962871 CDS
T10664
Symbol
Cdc40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101962871 (Cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101962871 (Cdc40)
Spliceosome [BR:
iti03041
]
Complex C
Other components
Step II factors
101962871 (Cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
101962871
NCBI-ProteinID:
XP_013216172
UniProt:
A0A287CYL9
LinkDB
All DBs
Position
Unknown
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGSRCPLPAADSLMHLTKSPSAKPSLTVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgcgattgcagctctggccgcttcttatggttcgggttcagggtccgaatcg
gactcggacagtgagggcagtaggtgtccgctgccagccgccgactctctcatgcacttg
actaagtcgccttcggccaagccctctctgacagtggcggtggactcggctccggaggtg
gcagttaaggaagatttagaaactggagttcaccttgaccctgctgtcaaagaagttcaa
tataatcctacctatgagactatgtttgctcctgagtttggaccagaaaatccctttaga
acacagcaaatggctgctcctagaaatatgctttctggctatgctgaaccagcccatatc
aatgatttcatgtttgaacagcaaagaagaacttttgccacgtatggttatgcattggac
ccttcattggataatcatcaagtgtctactaaatacattggttctgtagaagaagctgaa
aaaaatcaaggtttaactgtatttgaaactggtcaaaagaaaacagaaaagaggaaaaag
ttcaaagaaaacgatgcatctaatattgatggtttcttgggaccatgggcaaaatatgtg
gacgaaaaagatgtagccaaaccttcagaagaagaacaaaaagaattggatgaaatcaca
gcaaagaggcagaagaaaggcaaacaggaagaagagaaacctggggaggagaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcagatcctatcttcacatacctcaggat
gttggtgtcaatctgcggtcaactgtgccacctgaaaagtgttatcttcccaaaaaacaa
attcatgtgtggtctggacatacaaagggtgtcagtgcagtcagattgtttcccctctct
ggtcatttattgctgtcttgttccatggattgtaaaattaagctctgggaggtttatggt
gaccggcgatgtctgagaacatttattggtcacagtaaagctgttagggacatctgcttc
aatactgcaggaacacaattccttagtgcagcctatgacagatatcttaaactctgggat
actgaaacaggacagtgtatatcaagatttacaaacaggaaagtaccctattgtgtcaaa
ttcaatcctgatgaagataaacaaaatctctttgtggctgggatgtctgataaaaagatc
gtgcaatgggacattcgaagtggagaaattgtgcaggaatatgatcggcatttgggagct
gtcaacaccattgtttttgttgatgaaaataggagattcgtgagcacatctgatgataag
agcctaagagtttgggaatgggatatccctgtggatttcaagtatatagcagaacccagt
atgcactcaatgcctgcagtgactttgtctccaaatgggaaatggctagcatgtcaatca
atggacaaccaaatcttaatttttggagcacagaacagattcagattaaataagaaaaaa
atttttaagggacatatggtagcaggctatgcttgtcaagtggacttttcaccagacatg
agctatgtgatctcaggagatggaaatggaaaattaaacatttgggactggaagaccaca
aaactctatagccggtttaaagctcatgataaagtgtgtataggtgcagtgtggcatcct
catgaaacatctaaggtcattacatgtggctgggatggtctcattaaattgtgggattaa
DBGET
integrated database retrieval system
