Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101962956
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Entry
101962956 CDS
T10664
Name
(RefSeq) collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04518
Integrin signaling
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101962956
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101962956
04518 Integrin signaling
101962956
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101962956
09142 Cell motility
04820 Cytoskeleton in muscle cells
101962956
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101962956
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101962956
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101962956
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101962956
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101962956
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101962956
Hyaluronan
Extracellular matrix or blood plasma proteins
101962956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
SRPRB
DUF1194
DUF7125
Motif
Other DBs
NCBI-GeneID:
101962956
NCBI-ProteinID:
XP_005327054
LinkDB
All DBs
Position
Unknown
AA seq
2207 aa
AA seq
DB search
METWKMFLVTIFLAASFDFIRTQNIVCRKASVGDVVFLVDASINPQHARSVRNFLNILVN
SFNVSRETIRVGLAQYSDAPHSEFLLSTYHRKVDVLRHIQRLQFKSGGNKLGPALQFILD
HHFQEGAGSRASQGVPQVAMVVSSGQAEDHIREPAEAFRKAGILLYAVGIGNASWAELRE
IASSPKEKFTSFVPRVSGLISLAQKLRLELCDTLAKAAQPVDPVSPACREVALADIVFLV
DSSTSIGPQNFQKVKNFLYSIVLGLDISSDRVQVALAQYNDNIFPAFQLNQYPLKSVVLE
HIQNLPYRTGGTNTGSALEFIRTNYLTESGGSRAKDRVPQIVILVTDGESNDEVQDAADQ
LKEDGVIVYVVGVNVQDVQELQKIASEPYEKFLFNTENFNILQEFSGSLLQTLCSAVEGK
IKEYTKAYADVVFLVDTSRETSRASFQWMRNFIARTVSMLEVGRDRYQIGLAQFGDQGHT
EFLFNTYKTQNEMMTHIRERFVLRGGSRRTGKALWYLHQTFLQEAAGSRILQGVPQFAVV
ITSGRSEDEARDAAQTLREKGVKVLSVGVQQADRGELEGIGSPALVYDVPGEDGIRQLSQ
DVSMVIQGTGQPEFTTQATEEAIVACPTAIPADLVFLIEEFSRARQSNFQQVVNFLKTTV
NSLSIRPDALRIALVFYSEEPRLEFSLDTFQSSAKILEHLDKLTYQGRRGRTKTGAALDF
LRNEVFIQEKGGRSHQGVRQIAVVITEGFSQDNVSRPASHLRRAGVTIYAVGTQHASESK
DLEKMATYPPWKHAIPLESFLQLFVVGSKLKNQLCPEIVGKKAFFPGMGYTLQEGCVNIE
KADIYFLMDGSGSIGPEDFLEMKVFMNEVIKMFQIGPDRVRFGVIQYSDKMKSKFILSQY
TSVAELKAAIDDIQQGGGGTATGEALSNMTRVFADTARINVAQYLIVITDGKSSDPVVEA
AERLRVDGVVIYAIGIRDADVTELQEIAKDKVFFVYEFDSLKAIQQEVVQDICSSETCKN
RKADIIFLIDGSESISPKDFEKMKEFMERMVNQSNISADEIQIGLLQFSSTPQEEFRLNQ
YSSKVDIRRAILAVQQMNDGTRTGKALNFTLPFFDSSRGGRPNILQYLIVITDGVSQDNV
AIPAKALRDRNIIIFAIGVGEAKSSQLFEITNDKDKIYYEEKFESLQNLEKKILYKVCNP
QGCSMDLSVGIDISTPAKQVQQKLQELLPELMQQLALLSNLSCGTPGQINPSFRYLLPGL
NGQLIFDSGFEKYSDEIIQKFLAHQVEKNSYMDVDFLQTLGDNAINLSSAKVKVLLVFTD
GLDDDLERLKRASELLRSRGFSGLLIIALEGVHKLEELQELEFGRGFSYTQPLSITLQSL
PSILLKQLDTIVERTCCNMYAKCFGEDGNRGDHGFPGRKGEKGFAGFPGHPGKEGEYGER
GPRGLPGPRGEEGCMGVRGPQGARGFSGEKGDAGEEGVDGLDGEQGDRGVPGSSGEKGNR
GNWGLTGLPGQPGERGEPGLRGDPGDPGIDSHIQGPKGEKGRRGHQGLSSFNGPQGETGS
VGPRGSRGRRGLPGLKGVRGESGEQGYQGELGNPGSQGPRGRQGPPGTFGQKGLPGAQGN
PGPPGPNGSKGKAGPRGMKGELGDAGEKGSRGQQGPRGQPGLLGPDGYGRPGRKGTKGEP
GFPGYPGEQGEDGDPGHQGEKGAKGIRGKRGNAGFPGFIGAPGDQGPPGKMGIKGPKGLV
NMMPCEIVDFIRENCPCSTGVHKCPVFPTEVAFALDMSNDTSQLDFERMRDILLSLLMKL
EISESHCPTGARVAIISYNVRTDYLVRFSDYKRKPALLQAVRKIPLIQSSGHRNLGAAMR
FVARHVFKRVRPGLLVRKVAVFFQAGRAYDTVAVSTAMLELSAVDVTPVIITFTEEHYLP
DALLMDGASRFHLFVWETEHQQDVEHMTHCTLCYDKCQPDPECGPGGPGPQAVDMDLVFV
VDSSQDVEIDIYRGALHLVDAVLEDLEVAAQPSMSLQGSRVALVTHTTPGFRPGMGRSPV
LEGFNLTSYGHRTQMQRQVREAAGRLLQGLPALGHALEWTLEKVLLVAPLPRRARVLFTI
VASETSSWDREKLRTLSQEAKCMGITLFVLALGSGVGAHELVELSHVASTPSEQHLLRLE
GVSEPEVAYTRGFTRAFLNLLKSGTNQYPPPEITEECRRPNRGDTLL
NT seq
6624 nt
NT seq
+upstream
nt +downstream
nt
atggagacttggaagatgtttttggtcaccatctttcttgcagctagttttgactttatc
agaacacagaacattgtctgcaggaaggcctcggtgggagatgtggtatttctggtggac
gccagcatcaacccccaacatgcccgcagtgtgcggaacttcctaaacatcctggttaac
agctttaatgtcagcagagagaccatccgggtgggtctggcccagtacagcgatgcaccc
cactcagagttcctgctttccacctatcaccgcaaagtcgatgtgttgagacacattcag
aggcttcaatttaagtctgggggaaacaagttgggcccggctttgcagttcattctggat
caccacttccaggagggagccgggagccgcgcaagccaaggggtgccccaggtcgccatg
gtcgtcagcagtggccaggctgaggaccatattcgtgaacctgctgaggcatttaggaag
gcaggcatcctactttatgcagttggcattggaaatgcatcttgggcagagctcagggag
attgcaagtagccccaaggagaagtttacctcctttgttcccagagtctctggcctgatc
agtcttgcccagaagctgcggcttgagctgtgtgatactttggcaaaggcagctcaacct
gttgaccctgtatctccagcttgcagagaagtagccctcgcagacattgtgttcctagtg
gacagctctactagcattggaccccagaatttccagaaagtcaagaacttcctttactcc
attgtcttggggcttgacatcagcagtgaccgggtccaggtggcacttgcccaatataat
gacaatatcttcccagcctttcagctgaaccagtaccctctgaagagcgtggtcctggaa
catatccagaatcttccctaccgcacaggaggcacaaacacagggagtgccttggaattt
atccggaccaactacttgactgagtcgggtggcagccgggccaaggacagggttcctcag
atagtgatcctggtgacagatggggagtcaaatgatgaggttcaggatgcagctgaccag
ttgaaagaagatggagttattgtatatgtggtaggagtcaatgttcaggatgtccaggaa
ttacaaaaaatagccagtgagccatatgagaagtttctcttcaatacggaaaacttcaac
atcctgcaggaattctcaggaagccttcttcagactctgtgctcagcagtggagggtaag
ataaaagaatacaccaaggcctatgcagatgtggtctttcttgtggacacctcccgggaa
acatcaagggccagtttccagtggatgcggaatttcatcgctagaacagttagcatgctg
gaggttggcagggacaggtaccagattggactggctcagtttggtgaccaaggtcacact
gagtttttgttcaatacctacaagacccagaatgagatgatgactcacatccgtgagcgc
tttgtgctccgaggtggctccaggaggacgggcaaagctctgtggtaccttcatcagacc
ttcctccaggaggcagcaggaagtcggattctgcagggcgtccctcaattcgcagtggtc
atcacctccggcagatctgaggatgaggccagggatgctgcgcagacactaagggagaag
ggcgtgaaagtcttgtctgtgggtgtgcagcaggctgacaggggagaactggagggcata
gggtccccggcgcttgtatatgatgtgccgggagaagatggaatcagacagctatcacag
gatgtgagtatggtgatccaagggactggacagccagagttcacgactcaggctacggag
gaagccatagtagcatgtccaactgctatcccagctgacttagtattcctcatcgaggaa
tttagcagggctaggcaatccaactttcaacaagttgtcaatttcctaaagacgactgtc
aactctctaagcattcgtcctgatgccttgagaattgccttggttttctacagcgaggaa
ccacgacttgaattttcactggatacatttcagagttcagccaaaatcttggagcatttg
gacaaattaacttatcagggaagaagaggaaggacaaagactggtgctgctttggatttc
ctgaggaatgaagttttcattcaggagaagggtggccgatcccaccaaggtgtgcggcag
atagctgtggtcatcacagaaggtttctctcaggacaatgtgtccagacccgcttctcac
ctacgcagggcaggggtgaccatctacgcagttggtacccagcatgcctcagagagcaag
gacctggagaagatggccacatatcctccttggaagcatgccatcccccttgaatctttt
ttgcagctcttcgttgtgggaagcaagctgaagaaccagctctgccctgagattgtgggc
aagaaggcattctttcctgggatgggctataccctacaagaaggttgtgtgaatattgag
aaggcagatatttacttccttatggatgggtctggcagcatcggcccagaggattttctt
gaaatgaaggtgttcatgaatgaagtgataaagatgtttcagatcgggcctgacagagtg
agatttggagtcatccagtactcagacaaaatgaaaagcaaatttatcctcagccaatac
accagtgtggcagagctgaaggccgccattgatgacatccagcagggaggaggtggtact
gccactggggaggccctgagtaacatgactcgggtctttgcagacacagcccgaatcaat
gtggctcagtatcttatagtcatcactgatggcaaatcttcagaccccgtggttgaggct
gcagagagattgagggtcgacggagtcgtcatttatgctattggaataagagatgctgac
gttactgagcttcaggaaatagcaaaagacaaggtgttttttgtgtatgaatttgattcc
ttgaaggccatccaacaagaagtggtacaggacatctgctcctcagagacctgtaagaac
agaaaagctgacattatcttcctgatagatggttcagaatctatctccccaaaagacttt
gaaaagatgaaggaattcatggagaggatggtgaaccaatccaatattagtgctgatgaa
attcagattggcctgttgcagttcagctcaacccctcaggaagaattcaggctcaaccaa
tattcctcaaaggtggacattcgcagagccatcttggctgtccagcaaatgaatgatggt
acccgcacggggaaagccttgaacttcactctgcctttttttgacagttccagaggaggg
agacccaatattcttcaatatttgattgtgatcacggatggggtctctcaggataatgta
gccataccagccaaggctctcagggacagaaacataattatttttgccattggggtggga
gaagccaaaagttcccagcttttcgagattacaaatgataaggataaaatatactatgaa
gagaaatttgagtccctgcagaacctggagaagaaaattctttataaagtctgcaatcca
caaggatgcagcatggatttgtctgtaggaattgatatttcaactcctgcaaagcaagtt
cagcagaaacttcaagagttacttccagagttgatgcagcagctggctttgctttctaac
ctcagctgtggtactcctggtcagatcaacccaagcttccgctacttgcttcctggctta
aacggtcagcttatctttgactcaggctttgagaaatacagtgatgagatcatccagaag
ttcttggctcatcaggttgagaagaacagctatatggatgtagactttttgcaaaccttg
ggagataatgctatcaacctttcttctgctaaagtaaaggtccttttagtgtttacagat
ggactggacgatgatttagagagactgaagagagcttcggagctcctccgcagcagagga
ttctctgggctcctaatcattgccctggaaggtgtgcataaattagaagagcttcaggag
ctagaatttggcagaggattttcatatacacagcctctgagcatcactctacaatccctc
ccaagcatcttactgaagcaacttgacacaattgtggaaagaacctgctgcaatatgtat
gccaagtgttttggagaagatgggaacagaggtgatcatgggtttcctgggaggaaggga
gagaagggttttgctgggtttcctggtcatcctggtaaagaaggtgaatatggagaaaga
ggcccccggggtcttcctggacctcgaggtgaggaaggatgcatgggtgtgaggggacct
cagggagcaagaggattttcaggagagaagggtgatgctggtgaggaaggtgttgatggc
ttggatggagaacagggtgatcgtggagtcccaggatcatctggagaaaaaggaaacagg
ggaaattggggcttgacaggactaccaggacaacctggagagcgtggagagcctgggtta
agaggagatcctggggatcctggaattgatagtcacattcaaggacctaagggggaaaaa
ggaaggcgtgggcatcagggtctgtccagtttcaatggacctcagggggaaactggaagt
gttggccctcgggggtcacgaggaagacgaggtctgccagggttgaagggtgtgcgtgga
gaatctggtgaacagggctaccaaggagagcttggaaatccaggttcacaggggccaaga
ggaagacaaggacccccgggaacttttggtcaaaaagggttacctggtgcccaggggaat
cctgggcctccagggccaaatggttccaaaggaaaagctgggccaagaggaatgaaggga
gagcttggtgatgcaggagagaaaggctcacggggtcaacaaggaccaagagggcagcct
ggtcttcttggtccagatggatatggacgtccaggaagaaaaggaacaaagggtgaacct
ggattccctggctatcctggtgaacaaggagaagatggtgaccctggccaccaaggagag
aagggagcaaagggaatcagagggaagaggggtaatgctggctttcctggatttattgga
gctccaggtgaccaaggcccgccaggcaaaatgggcatcaagggacccaaaggtttggtg
aacatgatgccttgtgaaattgttgatttcattcgagaaaactgcccttgctcaacaggt
gttcataaatgcccagtgttcccgaccgaagtggcctttgccttggacatgtcaaatgat
acctcccagctggattttgagaggatgagagacattttattatctttgttgatgaagttg
gaaataagtgagagtcactgcccaacgggtgcccgagtggccattatttcctacaatgtc
agaacagattatctggttcgattctcagactacaagaggaagcctgcccttctgcaggct
gttaggaaaatccctctgatacagtcctctggccacaggaaccttggggctgccatgagg
tttgtggcaagacatgtattcaaacgtgtgcgccctggcctcctggtgaggaaggtggct
gtgttcttccaggcgggcagggcctatgacacagttgccgtcagcacagccatgctggag
ctcagtgccgtggacgtcacacctgtgatcatcaccttcacagaggagcactaccttcca
gatgctctactgatggatggagccagcagatttcatttgtttgtgtgggagactgagcac
cagcaggatgtggagcacatgacccactgtactctctgctatgacaagtgccagccagac
ccagaatgtgggccaggagggcctgggccccaggcagtggacatggacttggtgtttgtg
gtggacagctcccaagacgtggaaattgacatataccgtggagccttgcatctcgtggac
gctgtgcttgaagatctggaggtggctgctcagccgagcatgtcccttcaagggtcacgt
gtggctctagtgacacacactactccaggcttcaggcctggcatgggtcgatcccctgtg
cttgagggctttaacctgacctcctatggccaccggacacagatgcagagacaggtccgg
gaggccgcgggccgcttgctgcagggactccctgccttgggccacgctctagaatggacg
ctggagaaagtgctcctggtggccccgctaccgcggagggcgcgtgtcctcttcaccatc
gtggccagtgagacaagcagctgggacagggagaagctaaggactttgtcccaagaagcc
aagtgcatgggcatcaccctgtttgtgttggccttgggctctggtgtgggggctcatgag
ctggtggagctgtcccatgtggccagcaccccctctgagcagcacctgctgcgcttggag
ggagtttcagaaccagaggtagcctacaccaggggattcacacgggccttcctgaacctc
ctaaaaagtggaacaaaccagtatccacccccagagatcactgaagaatgtaggcgccca
aaccgtggggacactctgctgtaa
DBGET
integrated database retrieval system
