KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101963544
Entry
101963544         CDS       T10664                                 
Symbol
Lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03018  RNA degradation
iti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:iti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101963544 (Lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101963544 (Lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:iti03019]
    101963544 (Lsm4)
   03041 Spliceosome [BR:iti03041]
    101963544 (Lsm4)
Messenger RNA biogenesis [BR:iti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101963544 (Lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101963544 (Lsm4)
Spliceosome [BR:iti03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101963544 (Lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 101963544
NCBI-ProteinID: XP_005333056
UniProt: I3MRN3
LinkDB
Position
Unknown
AA seq 139 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcttcccttgtcgctactgaagacagctcagaaccaccccatgttggtggagctcaag
aatggggagacgtacaatgggcacctggtgagctgtgacaactggatgaacatcaacctg
cgggaggtgatctgcacgtccagggatggggacaagttctggcggatgcccgagtgctac
attcgaggcagcaccatcaagtacctgcgcatccccgacgagatcatcgacatggtcaag
gaggaggtggtggccaagggccggggccgcggtggcttgcagcagcagaagcagcagaaa
ggccgcggcatggggggcgctgggcgaggtgtgtttggcggccggggccgaggcgggatc
cctggcacaggccgaggccaacctgaaaagaagccgggcaggcaggcgggcaagcagtga

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