Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101963581
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Entry
101963581 CDS
T10664
Symbol
Polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03020
RNA polymerase
iti03420
Nucleotide excision repair
iti05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101963581 (Polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
101963581 (Polr2b)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101963581 (Polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iti03021
]
101963581 (Polr2b)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101963581 (Polr2b)
Enzymes [BR:
iti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101963581 (Polr2b)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101963581 (Polr2b)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101963581 (Polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
101963581
NCBI-ProteinID:
XP_005320092
UniProt:
I3M351
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcagacgaggatatgcaatatgatgaggatgatgatgaaatcaccccggat
ttatggcaagaagcatgctggattgtaatcagttcttattttgatgaaaaaggcttggtc
agacaacagttggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctattgacctacaagctgaagctcagcatgctagtggagaagttgaagaa
ccgccaaggtatttgttaaagtttgaacaaatttacctctccaagcctacccattgggaa
agagatggtgctccttcaccaatgatgccaaatgaggccagattaagaaatctcacgtat
tctgctccactttatgttgacataacaaaaacagtcattaaagaaggtgaagaacaactt
cagactcagcatcagaaaacttttataggaaaaattccaattatgttgcgttcaacttac
tgcctattgaatggcttaacagatcgtgatctttgtgagttaaatgaatgccctttggat
cctggtggctattttattattaatggatctgaaaaggttctgattgcccaagagaaaatg
gcaacaaacacagtttatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtaggtcatgtctggagaattcttcccgacctaccagtactatatgggttagcatgctg
gcaagaggagggcagggtgcaaaaaagagtgctattggtcagcgcatcgtggcaactcta
ccgtatatcaagcaagaagttcccatcattattgtgtttagagcattaggttttgtgtct
gatagagatatcctagaacatattatttatgattttgaagatccagaaatgatggaaatg
gtcaaaccttctcttgatgaagcttttgtcattcaagaacagaatgttgcattaaatttc
attggttcaagaggagcaaagcctggcgttactaaagagaaaagaattaagtatgcaaaa
gaagttttacaaaaagaaatgcttcctcatgttggtgttagtgatttttgtgagaccaaa
aaagcatatttcttgggatatatggttcataggttacttctggcagctttgggtagaaga
gaactagatgacagagatcactatggaaacaaaagattggatcttgctgggccactactt
gcgttcttatttagaggtatgtttaagaatttactgaaagaagtacgaatctatgcacag
aagtttattgatcgaggaaaggactttaacttggagttggcgattaaaacacggataata
tctgatggcttaaaatattctttagctactggaaactggggtgaccaaaagaaagctcat
caagccagagctggagtatctcaggtattaaaccgcctgacttttgcatctactctttct
catctgcgccgtttaaattctcctattggtagagatggcaagctagcaaaaccaagacag
ttgcataatacgttgtggggaatggtttgtcctgctgagaccccagagggccatgctgta
ggacttgtgaagaatttagcactgatggcttatatttcagttggatctcaaccttctcca
attctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcgactaagatttttgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaacaccctaaggaaattacggcgtcagatggacatcattgtgtctgaa
gtttctatgatcagagatattcgagagagagagattcggatctatactgatgcaggccgt
atttgtagaccacttctgattgtggagaaacaaaagctgcttttaaagaagagacatatt
gaccaattgaaagagagagaatataacaactacagttggcaagatcttgtggccagcggg
gtagtagaatatatagatactctagaagaagaaacagtgatgcttgcaatgaccccagat
gatttacaggagaaagaagttgcttattgttccacatatacccattgtgagattcatcca
tcaatgattcttggtgtttgtgcatctattattccctttcctgaccataaccagtcccct
agaaacacataccagtctgctatgggtaagcaggctatgggagtgtatatcaccaacttc
catgtacgtatggacacattggcccatgttctttattatcctcaaaaaccgcttgtgact
acacggtctatggaatatcttcgatttagagagttgccagcaggtatcaactcaattgtg
gccattgcatcatacactggatataatcaagaagactctgttatcatgaatcgttcagct
gtagaccgaggctttttcaggtctgttttctatcgctcatacaaagaacaggagtctaaa
aaaggatttgatcaagaagaggtttttgagaagcctacacgtgaaacatgccaaggtatg
aggcatgccatttatgacaagctggatgacgacggtttgatagctccaggagttcgtgta
tctggagatgatgttattataggcaaaacagtcaccttgcctgaaaatgaagatgaattg
gagagcaccaatagacgctataccaagagagactgtagcactttccttagaaccagcgag
acaggcattgtggatcaggttatggtaactctcaaccaggaaggatataagttttgtaaa
ataagggtacgctctgttagaattccacaaattggagacaaatttgctagtcgacatggt
cagaagggtacctgtggtattcagtatagacaagaggatatgccttttacctgtgaaggt
attacccctgatatcatcataaatccccatgccattccctctcgtatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcagctaacaagggtgaaattggtgatgccact
ccatttaatgatgctgttaatgtacagaagatttctaatcttttgtctgattatggctac
catctcagaggaaatgaggtcctctacaatgggttcactggtcgaaaaatcacatcacaa
atttttattggcccgacttactaccagcgtttgaaacatatggtggacgacaaaattcat
tctcgtgctaggggacctattcagatcctaaatagacagcccatggaggggagatctcgt
gatggtggcctgcgttttggagaaatggaacgagattgtcagattgcccatggtgcagcc
cagtttttaagagaaagattgtttgaggcatcagatccatatcaagttcatgtttgcaat
ctttgtggaataatggcaattgctaacaccaggacccatacatatgaatgcaggggctgt
cgcaataaaacccagatttctttggtgcgaatgccttatgcgtgcaagctgttgtttcag
gaacttatgtctatgagtattgcacctcgaatgatgagtgtttaa
DBGET
integrated database retrieval system
