Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101963815
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Entry
101963815 CDS
T10664
Symbol
Col6a6
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101963815 (Col6a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101963815 (Col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101963815 (Col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101963815 (Col6a6)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101963815 (Col6a6)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101963815 (Col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101963815 (Col6a6)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101963815 (Col6a6)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101963815 (Col6a6)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101963815 (Col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
101963815 (Col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
Radical_SAM
Integrin_beta
TOR1L1_N
Motif
Other DBs
NCBI-GeneID:
101963815
NCBI-ProteinID:
XP_005327056
LinkDB
All DBs
Position
Unknown
AA seq
2263 aa
AA seq
DB search
MKMWLILFLIITCFHVSVNQDSGPEYADVVFLVDSSDHLGVKAFPFVKFFINKMINSLPI
EANKYRVALAQYSDMLHNEFNLSTFRSRNPMLNHLKKNFGFLGGSLRIGNALREAHRIYF
SAPTDGRDRKLFPPILVVLASAESEDDVEEASKALRKDGVKIISVGMQKASEENLRAMAT
SQFHFNLRTVRDLSMFSSNMTQIIKDATKYREGAVNDRLVEVCQGPSVADVVFLLDVSIN
GSQENFDYLKAFLEESVSALDIKENCMRVGLVAYSNETKVISSLSRGVNKSEVLQRIQSL
SPRAGQAYTGAAIRKIRKEVFSAQKGSRKNQGVSQIAVLVTHRASEDNVTKAAVNLRREG
VTVFTMGIEGASRTQLQKVASHPAKQYVSMLSNFSDLAAHNQTFLKKLRNQITHTVSVLS
ERTETLKSACVDTEEADIYLLIDGSGSTQATDFQEMKTFLSQVVGMFNIAPHKVRVGAVQ
YADTWDLEFEINKYSNKHDLGKAIENIRQMGGNTNTGAALNFTLKLLQKAKKQRGNKVPC
HLLILTNGKSKDSILEPANRLREENIHVYAIGVKEANQTQLREIAGEEKRVYYVHDFDAL
KDIRNQVVQEICAEEACKDMKADIMFLVDSSGSIGPENFQKMKIFMKNLVSKSQIGADRV
QIGVVQFSDINKEEFQLNRFTTQSDISNAIDQMAHIGETTLTGGALTFVSQYFSPAKGAR
PNVRKFLILITDGEAQDIVKDPAVALRQEGIIIYSVGVFGSNVTQLEEISGRPEMVFYVE
NFDILQHIEDDLVLGICSPREECKRIEILDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKA
DVGKNQVRFGALKYADDPEVLFYLGDLGTKSEVISVLQNDQPLGGNTYTAEALAFSDHMF
TEARGSRLHKGVPQVLIVITDGESHDADKLNATAKTLRDKGILVLAVGIAGANPVELLAM
AGSTDKYYFVETFGGLKGIFSDVSASVCNSSKVDCEIEKVDLVFLMDGSNSIHPSDFKKM
KEFLASIVQDFDVSLNRVRIGAAQFSDTYRPEFPLGTFTGEKEISFQIENIQQIFGYTHI
GAALREVGHYFRPDMGSRINAGTPQVLLVLTDGQSQDEVAQAAEELRRKGVDIYSVGIGD
VDDQQLVQITGTAQKKLTVHNFDELRKVKKRIVRNICTSGGESNCFVDIVVGFDISTQLK
GQTFLEGQPWMETYLQDLLRAISSLNGVSCEVGTETQVSVAFQVTNAMEKHFPKFEIYSE
NILNSLKGVTVKGPSLLNADLLSSLWDTFQNKSATRGKVALLFSDGLDDDVEKLEQKSDE
LRKEGLNALITVALDGAAYSSDLADLLYIEFGKGFEYRTQFTIGMRDLGSRLSKQLVNVA
ERTCCCLFCKCIGGDGTTGDPGPPGKKGSSGIKGSEGYLGEEGIAGERGAPGPVGEQGTK
GCYGTKGPKGSRGLNGEEGEVGESGIDGLNGEQGGSGLPGRKGEKGDEGSQGSPGKRGAS
GDRGPKGLRGDPGIPGFDIYIEGPKGLKGERGRQGRRGWPGPPGTPGSRRKTASHGRRGH
TGPQGKTGIPGPDGLEGSWGLKGPQGPRGEAGAKGEKGGLGMKGPQGPPGPEGEAGNQGR
LGSQGNKGEPGDAGEKGAIGFPGPRGLQGDDGSPGYGSVGRKGAKGQEGFPGESGPKGET
GDPGSPGETGPKGSRGITISAGLPGEPGAPGETGPPGRKGVKGAKGLASFSTCDLIQYVR
DHSPGGHGKPECPVHPTELVFALDQSRDVTEEEFQRMKGIVASLVRDMKVRENHCPVGAR
VAVLAYDSHARHLVRLSDTYGKDQLLREIEAVPYERSSEGREMGKAMRFISRNVFKRTLP
GTSTRRIATFLSSGPSADAQSIAAATMEFSALDIIPVVIAFSNVPSVKRAFAIDDTGTFQ
VIVLPSGTEDIPALERLQRCTFCHDVCKPDASCDQDRPPPVQSYMDAAFLLDGSRNVGHA
EFEDIRSFLGTLLDHFEITPEPETSVTGDRVALLSHAPPDFLPNTQRSPVRTEFNLTTYS
SKHLMKRHVEQSVQQLNGDAFIGHALRWTLDNVFLTTPNLRRNKVIFVISAGETSYLDGE
TLKKESLRAKCQGYALFVLSLGPSWNDKELEDLASHPLDHHLIQLGRIQKPEHRYGVKFV
KSFINSIRRAINKYPPINLKAKCNRLSSTDPTQPLWQFRSFVPGPQKTVLKEDALQQTKF
FQDKKYLSRVVRGGRDDAIRNFPRNTSHTSKNGRRMTKPTPKR
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtggctgattttgttcctcataataacttgtttccatgtttctgtgaaccaa
gattctggccctgagtatgcagatgtggtgtttctggtggacagctctgaccacctggga
gttaaggccttcccatttgtgaaatttttcatcaataaaatgatcaacagtctccccatc
gaggccaacaagtaccgcgtggccctggcccagtacagtgacatgctccacaatgaattc
aacctgagtaccttcaggagcaggaaccccatgctgaaccatctcaagaagaacttcggg
ttccttggcggatccctgaggataggaaacgctcttcgggaggctcacaggatctacttc
tctgcacctactgatggaagagacaggaaactgtttcctcctattttggtggtcctggct
tcagcggagtccgaggatgatgtggaagaggcttcgaaggccctgcggaaagatggggtg
aaaatcatctccgtggggatgcagaaggcttccgaggaaaacctgagggccatggccaca
tctcagtttcacttcaacctccggacggtcagagacctcagcatgttctcctcaaacatg
acacagatcatcaaggatgcgaccaagtacagagaaggagcggtcaatgatcgcctcgta
gaagtgtgccaaggcccttctgtggctgacgtggtattcctgttggatgtgtccatcaat
ggcagccaggagaacttcgactaccttaaagcattcctggaagaaagtgtctctgccctt
gacatcaaggagaactgcatgagggttggcctggtggcctacagcaatgagaccaaagtg
atcagttcactgagcaggggcgtcaataagtcagaggttctccagcgtatacagagcctg
tctccccgggctgggcaggcctacacaggggccgccatcaggaagatcagaaaggaagtc
ttcagtgcacagaaaggcagtcggaaaaatcagggtgtgtcccagatcgcggtgctggtg
acccacagagcttcagaagataacgtgaccaaggcagcagttaacctccggcgcgagggt
gtgaccgtcttcaccatgggcatcgaaggggccagcagaacccagttgcaaaaggtagca
tctcaccctgccaagcagtatgtctccatgctgagcaacttctctgatctggctgcccac
aaccagacgttcctgaagaagctgcggaaccagataacacacaccgtctctgtcttgtca
gagcgcacggaaaccctcaaatcggcatgtgtggacacagaggaagcagacatctatctg
ctcattgacggctccgggagcacacaggccacagactttcaagagatgaagaccttcctg
tcgcaggtggtagggatgttcaacatcgccccccataaggtgcgcgtgggggctgttcag
tacgccgacacctgggacttggaatttgagatcaataagtactccaacaagcacgacttg
ggaaaggccatcgagaacatcaggcagatgggtgggaatacaaacacgggcgcagccctg
aatttcacactgaagttgttgcaaaaagcaaagaagcagcggggaaacaaagtgccttgc
cacctcctcattttgacgaacggcaagtccaaggatagcatcttggagcctgccaacaga
ctgagagaggagaacatccatgtctatgccattggggtcaaagaggccaaccaaacacag
ctgcgagaaatcgcaggagaggagaagagagtgtactacgtgcacgactttgatgcgttg
aaagacataaggaaccaagttgtccaagaaatctgtgctgaagaagcctgcaaggacatg
aaagctgacatcatgtttttggtggacagctctggcagcataggacctgaaaacttccag
aaaatgaaaatatttatgaaaaacctggtgagcaaatctcagattggggccgatcgggtg
caaatcggcgtggtgcagttcagcgacatcaataaggaggagtttcagctcaacaggttc
acgacccaaagcgacatttcaaacgcaatagaccaaatggctcacattggagaaactacc
ttgaccggtggcgccctgacctttgtgtctcagtacttcagccccgccaagggggcccga
cccaacgtcaggaagtttctcatcctcatcacagatggtgaagctcaggacatagtgaag
gacccagcagtcgccctccggcaagaaggcatcattatctactctgtgggagtatttggc
tccaatgtcacccagctcgaggagatcagtgggaggccagagatggttttttatgttgag
aattttgacattctgcagcacattgaagatgatcttgttttgggaatctgcagtcctcgt
gaagaatgcaagcggattgaaattctggatgttgtgtttgtgatcgatagctctggcagc
attgattacgatgaatacaatatcatgaaggacttcatgattggcttagtgaaaaaagct
gatgttggaaagaaccaagtccggtttggagccctgaagtacgctgatgacccagaggta
ctcttttatctgggtgatcttggcacaaaatcggaggtgatttcagtgctccagaatgac
cagcccctggggggcaacacttacacagcggaggcactagccttctcagaccacatgttc
actgaagccaggggcagccgcctgcataagggagtaccccaagtcctcatcgtgatcacc
gatggggaatctcacgatgctgataaactcaatgccactgccaagaccttgcgggacaaa
ggcattctcgtcctggcggtgggcattgctggcgccaatcctgtggagctgttagcgatg
gcaggatcaacagataagtactactttgtggagacttttggaggcctgaaggggatcttt
tcagatgtctcagccagtgtctgtaactcttcaaaagttgattgtgaaattgaaaaagta
gatcttgtttttctcatggatggttcaaatagcattcacccaagtgacttcaagaagatg
aaggaatttttagcatctattgttcaagactttgatgtcagcctcaacagagtgcgcata
ggagccgcccagtttagcgatacttaccggccagagtttccactgggaacattcacgggt
gaaaaggagatatcgtttcagattgaaaacatccagcagatctttggatacacacacatt
ggcgctgcactccgggaggtggggcattactttaggccagacatgggcagtaggatcaat
gcaggtaccccgcaggtgttgctggtcctcacagatggccagtcccaagacgaagtggct
caggctgctgaagagctgagacgcaaaggtgttgacatctactcggtgggcatcggagat
gtggatgatcagcagctcgttcagattactgggactgcacaaaaaaagttgacagttcat
aactttgatgaactgagaaaagtcaaaaaaaggattgtccgcaacatctgcacctcgggg
ggcgagagcaattgttttgtggatattgtggttggatttgacatctcaactcagctgaaa
gggcagacttttctggaaggccagccttggatggaaacctatcttcaagacctcttacgg
gccatcagctccctcaacggggttagctgtgaggtgggcacagagactcaggtcagtgtg
gctttccaagtgacaaatgccatggaaaaacatttccccaagtttgagatctacagtgaa
aacatcctgaacagcttgaagggggtgacagttaaaggcccgtctcttctcaacgcagac
ctcttgagttccctgtgggacacattccagaataagtcagcgacccggggaaaggtggcc
cttttattttcagatggattggacgacgatgttgaaaaacttgaacaaaaatcagatgaa
cttagaaaagaaggcctgaatgcactcataaccgtggctctggatggagctgcctattca
agtgacctggctgatctcctctacattgaatttgggaaaggatttgagtacaggacacag
ttcactattggcatgagggatcttgggagtcggctgtcaaagcagctggtcaatgttgcc
gaaaggacttgctgctgtttgttctgcaagtgcatcggaggggatggcacaacaggagat
cccggtccaccagggaaaaagggatcctcgggtattaaaggcagtgaaggctacttgggg
gaggaaggcattgctggagaaagaggagcccctggaccagtgggagagcaaggtactaag
ggatgctacggcaccaaaggtcctaagggaagcagaggactaaatggagaggagggagaa
gttggggaaagtggaattgatgggctaaatggagaacaggggggcagtggtcttcctgga
agaaaaggagaaaagggtgatgagggatcccagggaagcccaggaaagagaggcgcttct
ggtgaccgtggaccaaagggccttcgaggagatccgggaattcctggatttgacatttac
atagaaggacccaagggcttgaaaggagaacgtggaagacaaggtagaagaggctggcca
ggaccccctggaacaccaggctccagaagaaagacagcatctcatggccgaagaggacat
acaggcccacagggaaaaacaggcattccaggcccagatgggcttgaaggctcctgggga
cttaagggccctcagggcccaagaggagaggctggtgcaaaaggagaaaaaggaggcctg
ggaatgaaaggccctcaggggcctccaggacccgaaggagaagcaggcaaccaaggacgt
ttgggaagccaaggaaataaaggagagcctggagatgcaggagaaaaaggagctattggc
tttcctggtcctcgaggcttacagggtgatgatggcagtccaggttatggtagtgttgga
cgtaaaggagcaaagggacaagaaggattccctggagagagtggacctaagggtgagacg
ggggaccctgggagtccaggagagactggacccaaaggatccagaggcataacgatatct
gctggacttccaggagagccaggagcccctggggagacaggaccccctggacgcaagggc
gtgaaaggggccaaaggattggcttcattttcaacatgtgacctcattcaatatgtgcgg
gaccacagtccgggcggacatggaaaacctgaatgcccggtgcatccaaccgagttggtg
tttgctttggaccagtcccgggatgtcacggaggaggagttccagcggatgaaggggatc
gtggcctccctggtgagagacatgaaggtccgggagaaccactgccccgtgggggcgcgc
gtcgccgtcctcgcctacgactcgcacgccaggcacctggtgcgcctctcggacacctac
gggaaggaccagcttctccgggaaatcgaagctgtgccttacgagaggtcctccgagggc
agggagatgggcaaggccatgaggttcatttccaggaacgtcttcaagcggacccttccc
ggaacttccacgagaagaatcgccacgttcttaagcagcggtccgtcggccgatgcgcag
tccatcgccgcggccaccatggaattcagcgccctggacatcattcccgtggtgatcgcc
ttcagcaacgtgccctccgtcaaacgcgcgtttgcgatcgatgacactggcacattccaa
gtcatagtgcttccctccgggactgaggatataccagcattagagagactccagcggtgc
actttctgccatgatgtctgcaagcctgatgcttcttgtgaccaagacagaccaccccct
gtacagtcttacatggatgctgctttcctgctggatggctcccggaatgtgggacatgct
gaatttgaagacataagaagcttcctggggaccctgctagatcattttgaaatcacccca
gagccagagacctctgtcactggagaccgggtggccctactgagtcatgccccccctgac
ttcctacccaacactcagaggagtcctgttagaactgagttcaaccttacgacctatagc
agtaagcacctcatgaagaggcacgtggaacaatcggttcaacagctaaatggagatgct
tttattggtcatgccttacggtggactctggacaatgtctttttaaccacacccaatctg
agaagaaacaaagtcatatttgtgatatctgctggggaaaccagttacttggatggggaa
accttaaagaaagagtccttgagagccaaatgtcaagggtatgctctatttgtgctttcc
cttggcccttcatggaatgacaaggaactggaagatctagccagccacccattggaccac
cacttgatccagctgggccgaattcagaaacctgagcacagatatggtgtgaagtttgtg
aagtcctttataaactcaatcaggcgtgcaatcaacaaatatccaccaataaacttgaaa
gcaaagtgcaaccgtctcagctctacagacccaacacagcccctgtggcagttccgaagc
tttgttcctggaccacagaaaactgtcctcaaagaagatgcattacagcagacaaaattc
ttccaagataagaaatatctttcaagagtagtgagaggtggtagagatgatgctattcgg
aattttcccaggaacacatcccatacttctaaaaatggaaggagaatgacaaaacctact
cccaaaagataa
DBGET
integrated database retrieval system
