Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101963858
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Entry
101963858 CDS
T10664
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03015
mRNA surveillance pathway
iti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101963858 (Pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
101963858 (Pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101963858 (Pabpc4)
03041 Spliceosome [BR:
iti03041
]
101963858 (Pabpc4)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101963858 (Pabpc4)
mRNA cycle factors
Stress granule specific factors
101963858 (Pabpc4)
Spliceosome [BR:
iti03041
]
Complex C
Other components
Complex C specific factors
101963858 (Pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
101963858
NCBI-ProteinID:
XP_005317910
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEIDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgccgccagcagctaccccatggcctccctgtacgtgggcgacctgcactcg
gacgtcaccgaggccatgctgtacgaaaagttcagtcctgccgggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctcgctgggttatgcctacgtcaacttccag
cagccagccgacgctgagcgggccttggacaccatgaactttgatgtgattaagggaaag
ccaatccggatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaatttggacaaatctatagataacaaggcactttatgatactttctct
gcctttgggaacattctgtcctgcaaggtagtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgaaaagagcgggaa
gctgaacttggagccaaagctaaggaattcaccaatgtttatatcaaaaactttggggaa
gaaatagatgatgagagtctaaaagagctgttcagccaatttggtaagaccttaagtgtg
aaggtgatgagagatcccagtggaaaatccaaaggctttggctttgtgagttacgaaaaa
catgaagatgccaataaggctgtggaagagatgaatggaaaagaaatcagcgggaaagtc
atattcgtaggccgtgcacagaagaaagtagaacgccaggctgaattaaaaaggaaattt
gagcagctcaaacaggagagaattagtcgataccagggggtgaatctctacattaagaac
ttggatgacaccattgatgatgagaaattaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgctggaggatggaagaagcaaagggtttgggttcgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcactgaaatgaatggacgcattgtgggctcc
aagccactatatgttgccttggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcagcgggtagctgggatgagagcactccctgccaatgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgccagcagttccacaggctcaaggaagacct
ccatattacacacctaaccagttagcacaaatgaggcctaatccacgctggcaacaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgtcagtctgggcctcgtcca
actcttcgccatctggctccaactggtaatgctccggcctctcgtggccttcctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcccacagctgtgcca
aaccttgcaccacgtgctgcagttgctgctgctgctcctcgggctgtagcaccatacaag
tatgcctctagcgtccgcagccctcaccctgccatacagcctctgcaggcaccccagcct
gcagtccatgtgcaggggcaagaacccctgaccgcctccatgcttgctgcagcaccaccc
caggaacagaagcagatgctgggcgaacgcttgtttccacttatccaaacaatgcattca
aacctggctggaaagatcacaggaatgctgctggagattgataactctgagctgctacac
atgctggagtcccccgagtctctccgctccaaggtggatgaagctgtggcggttctacaa
gctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctct
tag
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