Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101963973
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Entry
101963973 CDS
T10664
Symbol
Dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101963973 (Dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
iti03041
]
101963973 (Dhx16)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101963973 (Dhx16)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101963973 (Dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
101963973 (Dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
SecA_DEAD
Flavi_DEAD
nSTAND3
Cas3-like_C_2
SRP54
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
101963973
NCBI-ProteinID:
XP_005341091
UniProt:
I3MI56
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MATPAGLERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEDFVQRLRDTDTLDLSGPAR
DFALKLWNKVPRKVVVEKPARAAEREARALLEKNRSYKLLEDSEESSEETVGRTGSSLHK
KRKKRKHLRKKHQEEEEEEEEEIPETGKNKTGASKQQTEKPESEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVL
EEEETIEFVRATQLQGDEEPSAPPSSAQAQQKESIQAVRRSLPVFPFREELLAAIANHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMH
FDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS
GYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKELEDPHAKKMPKKIGKTREELG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcctgcagggctggagcgctgggttcaggaggagctgcactcggtgctgggg
ctcagcgagcggcacgtcgcgcagttcctgattggtacagcgcagcgctgtgcctccgcc
gaggattttgtgcagcgcctgcgagacaccgataccctggatctcagcgggccggcccgg
gatttcgccctgaaactctggaacaaggttccaaggaaggtggtggtagaaaagccagct
cgggcagcggagcgagaggcccgagccctactggagaagaaccgatcatacaagttgctg
gaagacagtgaggaaagtagtgaggaaactgtgggtagaactgggagcagcctacataag
aagcgtaagaaacggaaacacctcaggaagaaacaccaggaggaggaggaagaagaggaa
gaagagattcctgagacagggaagaacaagacaggggcaagcaaacagcagactgagaag
ccagagtcagaggatgagtgggaacggacagaacgggagcgccttcaggatctggaagaa
cgtgatgcttttgctgagcgggtccggcagcgagacaaggatcggactcgcaatgtcctg
gagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggccgaggaa
gaccggaaagccatggtccctgaactacgaaaaaaatcccgccgagaatacctggcaaag
cgggagcgagagaagttggaggatctggaggcagagctggctgatgaggagttcctcttt
ggggatgtggaactcagccgacatgagcgcagggagctcaaatacaaacggcgagtgcgg
gatctagcccgggagtaccgggcagctggtgagcaggagaagctggaggccaccaaccgc
taccatatgcccaaggagacccgaggacagccagctcgtgctgtggacctagtggaggaa
gaatcaggtgctcctggggaggagcagcggcgatgggaggaggcccgtctaggggcagca
tctttgaagtttggagcccgagatgctgcctcccaggaacccaaatatcaactggtgctg
gaggaggaggagaccattgagtttgtccgtgctactcagcttcagggtgatgaggagcca
tcagctccaccctcttcagcccaagctcagcagaaggagtctatccaggccgtccgccga
agcctccctgtgttcccatttcgagaggaactcctggctgccattgcaaatcatcaagtc
ctcatcattgaaggcgagacaggctctgggaagaccacccaaatcccacagtaccttttt
gaagagggttacacaaagaagggtatgaaaattgcctgcactcagccccggagagttgca
gccatgagtgtagctgcccgagtggcccgggagatgggtgtgaagcttgggaatgaggtt
ggctacagcatccgatttgaggattgcacatcagagcgaacagttctccgctacatgaca
gatgggatgcttctccgggagttcctttctgagcctgacctggcaagttacagtgtggtc
atggttgatgaagctcatgagcggaccctacacacagacattctcttcgggttaatcaag
gatgttgctcgcttccgacctgagctcaaggtcttggtagcctctgccacactagatact
gcccgtttttccacattctttgatgatgcccccgtcttccggattcctggacgcagattt
ccagttgacatcttctataccaaggctccagaggctgactacctagaagcctgtgttgta
tctgtacttcagatccatgtgacccagccacctggggatatcctggtcttcctgacagga
caggaggagattgaggctgcctgtgagatgctccaggatcgttgccgccgcctgggctca
aaaattcgggagctcctggtgctgcccatttatgccaacttgccctctgacatgcaggct
cgaatttttcaacccacaccacctggggcacgaaaggtggttgtggcaacaaacattgct
gagacttcactcaccattgagggcatcatttatgtgctggatccagggttctgtaagcag
aagagctacaatccccgcacaggcatggagtcgctcactgtcacaccctgcagcaaggcc
tcagccaatcagcgggctggccgggcaggtagggttgctgcagggaagtgcttccgccta
tatacagcctgggcctatcagcatgagctggaggagaccacagtgcctgagatccagagg
actagcctgggcaatgttgtactgctgctcaagagcttagggatccatgacctaatgcac
tttgatttcctggaccctccaccatatgagaccctgctgctagctttggagcagctgtac
gctctgggagccctcaatcacctgggggagctcaccacgtctggtcgaaagatggcagag
ctgccagtggaccccatgttatcaaaaatgatcttggcttctgagaagtacagctgttca
gaggagatcctgacagtggctgccatgctctctgtcaacaactccatcttctacagaccc
aaagataaggttgtccatgctgacaatgcccgagtcaacttcttcctccctggtggggac
cacctggttctcctaaacgtgtatacacagtgggctgagagtggctactcttcccagtgg
tgctatgagaactttgtacagttcagatctatgcgccgagcccgggatgtgcgggaacag
ctagaggggctcttggagcgagtagaagtcggtctgagttcctgccaaggggactatatc
cgtgtacgcaaggctatcactgctggctacttttaccacacagcacggctgacacgtagt
ggctatcgcactgtgaaacagcagcagaccgtgttcattcatcccaactcttccctcttc
gagcaacagccacgctggctgctctaccatgaacttgtcttgaccaccaaggagttcatg
agacaggtattggagattgagagcagctggcttctggaagtggctccccattattataag
gccaaagagctagaagatcctcatgctaagaaaatgcccaaaaaaataggcaagacacga
gaagaactagggtag
DBGET
integrated database retrieval system
