Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101964265
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Entry
101964265 CDS
T10664
Symbol
Dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58 isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101964265 (Dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
iti04054
]
101964265 (Dhx58)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101964265 (Dhx58)
Pattern recognition receptors [BR:
iti04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
101964265 (Dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
Herpes_UL25
Terminase_6N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101964265
NCBI-ProteinID:
XP_005321924
UniProt:
I3M834
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MELRPYQWEVIKPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV
TQHAEEFSRMLDGRWTMTTLSGDMGPRAGFGHMARSHDLVICTAELLQIALTSPEEEEHV
ELTAFSLIVVDECHHTRKDTIYNIILSRYLQHKLQRARPLPQVLGLTASPGTGGASKLSG
AIDHILQLCANLDTWRIMSPEKYRSQLQEHSPKTCKQYDLCHRRRQDPFGDLLKKLMDQI
HDHLEMPELSRDFGTQMYEQQVVELSKSAAEAGLQQRRVYAVHLRRYNDALLIHDTVRAV
DALTSLQDFYHRERATKTQILRAERWLLALFDGHKDMLTRLATHGPKNPKLEMLEQILLK
QFGSVDNPRGIIFTRTRQSAHSLLCWLQQQPGLQSVDIRAQMLIGAGNSSQTTHMTQRDQ
QEVIRKFRLGSLNLMVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRARAGQSLYS
FVATEGSRELRRELTNEALEALMEQAVAAVQRMDQAEYQAKIRELQQAALIKRAARAAQQ
ESQRQQFSAEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSIYYNVSREPVVIDRV
FKDWRPGGTISCRNCGEVWGLQMIYKSVNLPALRIRSVLLETPRGRIQAKKWSRVPFPVA
DFNILEDSAQGLSDLSLE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgaccttaccagtgggaggtgatcaagcccgccctggagggcaagaacatc
atcatatggctgcccactggcgcagggaagacccgggcagctgcttatgtggccaagagg
catctagagactgtggatggagccaaggttgtggtgctagtcaacagggtgcatctggta
acccagcatgctgaggagttcagtcgcatgctggatggacgctggaccatgacaaccctg
agtggggacatggggccacgagctggctttggccacatggcccgaagccatgacctggtc
atctgtacagctgagctgctacagattgcactgaccagccctgaggaggaggagcacgtg
gaactcacagccttctccttgattgtggtggatgagtgtcaccacacacgcaaggatacc
atctacaacatcatcctcagccggtacctacagcataagctgcagagggcgcggccccta
ccccaggtgctgggtctcacagcctccccaggcactggtggggcctccaagctcagcggg
gccattgaccatatcctacagctctgtgctaacttggatacatggcgcatcatgtcacct
gagaaataccgctcccagctacaagagcacagtccaaagacatgcaagcagtacgacctc
tgccataggcgcaggcaggacccatttggggatttgctaaagaaactcatggatcaaatc
cacgaccacctggagatgccagagttgagccgggactttggaacgcagatgtacgagcag
caggtggtggagctgagcaagtctgctgccgaggccgggctccagcagcgacgggtgtat
gccgttcacctgcggcgctacaacgacgcactgctcatccatgacactgtccgcgcagtg
gacgccctgacctctctgcaggatttctaccacagggaacgtgccaccaaaacccagatc
ctgcgcgctgagcgctggctgctggcactgttcgatggtcacaaggatatgctgacccga
ttggctactcacggccctaagaacccaaaactagagatgctcgaacagattctgctgaag
cagttcgggagcgttgacaacccccgtggcatcatctttacccgaacccgccagagtgct
cactccctcctgtgctggctccagcagcagcccggcctgcagtcagtggacatcagggct
cagatgctgattggagctgggaacagcagccagaccacccacatgacccagagggaccag
caagaagtgatccggaagttccgacttggctctctgaaccttatggtagccacaagcgtg
gctgaggagggattggacatagcccagtgcaatgtggttgtgcgttatgggctcctcacc
aatgaaatctccatggtccaggcaaggggccgagcccgggctggtcagagcttgtactca
tttgtggcgacagagggcagtcgggaactgcggagggagctgaccaatgaggcgctggag
gctctgatggagcaggcagtggcagctgtgcagaggatggaccaggctgagtaccaggcc
aagatccgggaactgcagcaggcagccctgatcaagcgagcagcccgggccgcccaacag
gagagtcagaggcagcagttttcagcggagcatgtgcaactactctgcatcaactgtatg
gtggcagtgggccatgggagtgacctgcggaaagtagagggcacccaccacgtcaatgtg
aaccccaacttctcgatctactataatgtctcccgggagcccgtggtcattgacagagtc
tttaaggactggagaccagggggtaccattagctgcaggaactgtggtgaggtttggggt
ctgcagatgatctacaagtccgtgaatctaccagcactcagaatccgcagcgtgctgctg
gagaccccccgagggcggatccaggccaaaaaatggtcccgagtgcccttcccagtggct
gacttcaacatcctggaagactctgcccagggcctgtctgatctttccctggaatga
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integrated database retrieval system
