Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101964536
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Entry
101964536 CDS
T10664
Symbol
Ccdc88a
Name
(RefSeq) girdin isoform X3
KO
K25392
girdin
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
iti03037
]
101964536 (Ccdc88a)
Cilium and associated proteins [BR:
iti03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
101964536 (Ccdc88a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
APG6_N
Motif
Other DBs
NCBI-GeneID:
101964536
NCBI-ProteinID:
XP_021579949
LinkDB
All DBs
Position
Unknown
AA seq
1873 aa
AA seq
DB search
MENEIFTPLLEQFMTSPLVTWVKTFGSLAAGNGTNLDEYVALVDGVFLNQVMLQINPKSE
SQRVNKKVNNDASLRIHNLTILVRQIKFYYQETLQQLIVMSLPNVLIIGKNPFSEQGTEE
VKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEATD
MSQEDIEPLLKNMALHLKRLIDERDEHSETIIELSEERDGLHFLPHASSSAQSPCGSPGM
KRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQMEIELKRLQQENMNLLS
DARSARMYRDELDALREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETK
TMLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK
QSMDESLHLGWELEQISRTSELSEAPQKSLGHEVNELTSSKLLKLEMENQSLTKTVEELR
STMDSVEGNTSKILKMEKENQRLSKKVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEK
TIETLRENSERQVKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETS
SKLSKIEFEKRQIRKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA
LEHENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKM
AQLQLENKELESEKEQLKKSLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQ
QLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKR
LRQQAEIKDTTLEENNVKIGNLEKENKTLFKEIGVYKESCVRLKELEKENKELVKRATID
IKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESK
LESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSS
PPTTGEDNKWERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQ
AQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENE
SLIKDREDLKSLYDSLVKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHKDLED
RYNQLLKQKGQLEDLEKMLKVEQEKILLENKNHETVAAEYKKLCGENDRLNHTYNQLLKE
TEVLQTDHKNLKSLLNTSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNL
EEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQ
YKFYDPSPPRRRGNWITLKMRKLIKSKKDINRERQKSLTLTPTRSDSSEGLLQLPHQDSQ
DSSSVGSNSLEDGQTLGTKKSSMVALKRLPFLRNRPKDKDKMKACYRRSMSMNDLVQSMV
LAGGQWTGSTENLEAPDDISTGKRRKELGAMAFSTTAINFSTVNSSAGIRSKHLVNNKDA
TSFEDISPHGISDDSSTGSRVHASRPASLDSGRTSTSNSNNNASLHEVKAGAVNNQSRPQ
SHSSGEFSLLHDHETWSSSGSSPIQYLKRQTRSSPVLQHKMPETLESRAHHKIKTGSPGS
EIVTLQQFLEESNKLTSIQLKSSSQENLLDEVMKSLSVSSDFLGKDKPVSSGLARSVSGK
APGDFYERRTTKPEFVRSGPRKTEDAYFISSSGKTTPGTQGKIKLVKETSLSRQSKDSNP
YATLPRASSVISTAEGTTRRTSIHDFLTKDSRVPVSVDSPPPAADSNITAASNVDKVQES
RHSKSRSREQQSS
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaatttttactccccttctggagcagttcatgaccagccccttggtcact
tgggttaaaacgtttggatccctggctgcaggaaatgggaccaacctggatgaatatgtg
gctttggtggatggggtattcttgaaccaggtcatgctccaaattaatccaaaatcggag
agtcagagagtaaataaaaaagtcaacaatgatgcttcacttagaattcataatctaacc
attttggtgagacagataaaattttattaccaggagactttgcagcaattgattgtgatg
tcattgccaaatgtcttaatcattggtaaaaatcccttttctgagcaaggcacagaagaa
gttaaaaagctgcttttactcttactggggtgtgcagttcagtgtcagaaaaaagaagaa
tttattgaaagaattcaaggtttagattttgatacaaaagcagcagttgccgcacatatt
caagaggtaacacataatcaggaaaatgtgtttgatctgcaatggatggaagcaacagat
atgtctcaggaagatatagaaccactcttgaaaaatatggcattgcatctaaaaagactt
atagatgaaagagatgaacattcagagactatcatagagctctctgaagagagagatggt
cttcattttctaccccatgcctcttcatctgcacaatcaccctgtggttctccaggcatg
aagcgaacagaaagtcgacagcatctgtcagtggaactggcagatgctaaggccaaaata
agaaggcttaggcaggaactggaagaaaagactgaacagttgttggattgtaagcaggag
cttgaacaaatggaaatagaacttaaaaggctgcaacaagagaacatgaatttactttcg
gatgctcgttctgctcgaatgtaccgagatgaattagatgcacttcgagagaaagcaatt
agagttgataagcttgaaagtgaagtcagcagatataaagagaggctacatgatattgaa
ttttataaagcaagagttgaggaattaaaagaagacaatcaagttttattagaaacaaaa
accatgttggaagaccaactagaaggaactcgagctcgttctgataaattacatgaatta
gaaaaagagaatttacaattaaaggctaaactgcatgatatggaaatggaacgagatatg
gatagaaaaaagattgaagaattaatggaagaaaacatgactttggaaatggcacagaag
caaagcatggatgaatcattacatcttggctgggagctggaacagatatccagaactagt
gaactttctgaagcaccacagaaatccttgggccatgaggtgaatgagctaacatcaagt
aagttattaaagttagaaatggaaaaccagagtttgacaaaaactgtggaagagctccgg
agtactatggattctgtagaaggcaacacctccaaaattctgaaaatggaaaaagaaaat
caaaggttaagtaaaaaggttgaaattcttgaaaatgagattattcaagaaaagcagagt
cttcagaattgtcagaatttaagcaaggatctaatgaaggagaaagctcagcttgaaaaa
acgattgaaacacttagagaaaattcagagagacaggtaaaaatattggaacaggaaaat
gaacatctgaatcaaacagtgtcttccttaaggcagcgctctcagataagtgctgaagca
agggtgaaagacatagaaaaagaaaataagattctccatgaatctatcaaagaaacaagt
agcaagctaagcaagattgaatttgaaaaaaggcaaattagaaaagaattggaacattat
aaagaaaagggagaacgagctgaagaacttgaaaatgagttgcatcatcttgaaaaagaa
aatgaattgttacagaaaaagataactaatttaaaaattacttgtgaaaaaattgaggcc
ttagaacatgaaaattcagaactagaaagagaaaatagaaaattaaaaaaaacattggat
agctttaaaaatcttacttttcagttagaatccctagaaaaagagaattcccaacttgat
gaggaaaacttagaactgcgaaggaatgtagaatctttgaagtgtgccagcatgaaaatg
gctcagctacaattagaaaacaaagaactggaaagtgaaaaagagcaacttaagaagagt
ttggagcttatgaaagcatctttcaagaaaacagaacgtttggaagttagttaccaggga
ttagatacagaaaatcagcggctacagaaagctctagaaaatagcaataaaaaaattcaa
caattagaaagtgaactacaagacttagagatggaaaatcaaacattgcaaaaaaaccta
gaggaattgaaaatatctagcaaaagactagaacaactggaaaaagaaaataaatcatta
gagcaagagacatctcaactggaaaaagataaaaaacaattggaaaaggaaaataagaga
ctccgacaacaagcagaaataaaagataccactttagaagaaaacaatgtgaagattgga
aatttggaaaaagaaaataaaactttatttaaagaaattggtgtatataaagaatcttgt
gttcgtctaaaagaattagagaaagaaaacaaagaacttgtgaaaagagcaactattgat
ataaaaactttggttacattacgtgaggatttggtgagtgaaaaattgaagactcaacaa
atgaataatgatcttgaaaaattaactcatgaacttgagaagatagggttaaataaagag
agactgttgcatgatgaacaaagtactgatgacagtaggtacaaacttttggaatcaaaa
ttagaatctactcttaagaagtcacttgaaataaaagaagaaaagattgctgctttagaa
gctcgattagaagaatccacaaattataatcagcaattgcgccaagaacttaaaacagta
aaaaaaaattatgaagctctcaaacagagacaagatgaggaaaggatggtgcagagctct
cctccaacaactggtgaagataacaaatgggagcgagaaagtcaagaaacaaccagagag
cttctaaaagttaaagacagattaattgaagtagaaagaaataatgctacactgcaagca
gagaagcaagcgttgaaaactcaactgaagcaacttgaaacacagaacaataatttgcag
gctcagattcttgctcttcagcggcagacggtgtcattacaggaacagaataccactctt
caaacacagaatgccaagcttcaggttgaaaattccacccttaattcccaaagtacctca
cttatgaaccagaatgcacaactcctaatccagcagtcttccttagaaaatgaaaatgaa
tccttaatcaaagatcgagaagacttgaaatctctctatgattctttggtcaaagatcat
gaaaagctggaacttcttcatgaacggcaggcttcagagtatgaatctctcatctctaaa
catggaactcttaagtctgcccacaaaaatcttgaggtggaacataaagaccttgaagac
cgttacaatcagttactaaaacagaaaggacaactggaagatttggaaaaaatgctcaaa
gtagaacaggaaaagatcctgcttgaaaacaaaaatcatgagacagtagctgcagaatac
aagaaactttgtggtgaaaatgataggttgaatcatacatataatcagcttttaaaagag
actgaagttttacaaactgaccataaaaatttgaaaagtcttctaaatacttctaaactg
gaacaaacaaggttagaagctgaattttcaaaactgaaggagcagtaccaacagctagat
atcacgtccaccaagctgaataatcagtgtgagttgcttagccaacttaaaggaaatttg
gaagaagaaaatcgacacttactagatcaaattcaaactctcatgctacagaacagaaca
cttttggagcagaatatggaaagcaaggatctttttcatgttgaacaaagacagtacatt
gataagttaaatgaattaagacggcaaaaggagaaattagaagaaaaaattatggaccaa
tacaaattttatgacccatctcctcctagaaggagaggcaactggattactctaaaaatg
agaaaattgataaaatccaagaaagatattaatcgagaacgtcagaaatctctaacgtta
acacctacccgttcagactccagtgaaggacttcttcagctgccccatcaagatagtcaa
gatagttcttcagtaggatcaaactctttagaagatggccaaaccctggggaccaagaaa
agcagcatggttgcactgaaaagactgccctttttgaggaacagaccgaaggataaagac
aaaatgaaggcctgctaccgtcgttccatgtccatgaatgacctggtgcagtccatggtc
ctagcaggaggacagtggacaggtagtactgagaatttggaggctcctgatgatatttca
acgggtaaaaggagaaaagaattgggagctatggccttctctactacagccatcaacttt
tcaactgtcaactcttctgcaggcatcagatccaagcatttggttaataataaagatgct
acatcctttgaagacataagtccacatggtattagtgatgattctagtacgggatcaaga
gttcatgcttcaagaccagccagccttgatagtggcagaacatccactagcaatagcaat
aataatgcttcactccatgaagtcaaagcaggtgcagttaataaccaaagcaggccacaa
agccacagcagtggagaatttagcctgcttcatgatcatgagacttggtccagcagtggt
agcagtccaatccagtacttgaaaagacagaccagatcaagtccagtgctccagcacaaa
atgcctgaaacactagaaagtcgagcacatcacaaaatcaaaactggttcccctggaagt
gaaattgttactctacaacagtttttggaagaaagcaacaagcttacctcaatacagtta
aagtcctcaagccaagagaatctcttagatgaagtaatgaaaagtttgtctgtctcttct
gactttttgggaaaagacaaaccagttagctctggtcttgccaggtcagtaagtggaaaa
gccccaggggacttctatgagagacggacaactaagcctgaatttgtgagatctggtcct
cgaaagactgaagatgcatacttcattagttcttcaggaaaaactacaccaggcactcaa
ggaaagataaaattagtaaaagaaacctctctgtctcgacaatcaaaagatagcaatcct
tatgccactttacctcgtgcaagtagtgtgatctctactgccgaaggaactacacgaagg
acaagcatccatgattttttgaccaaggacagtagagtacctgtatcagttgattcacca
ccacctgctgctgatagcaacatcactgcagcatctaatgtggacaaagtacaagaaagc
agacattcaaaaagcaggtctagggagcaacaaagctcctaa
DBGET
integrated database retrieval system
