Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101965194
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Entry
101965194 CDS
T10664
Symbol
Col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04382
Cornified envelope formation
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04926
Relaxin signaling pathway
iti04933
AGE-RAGE signaling pathway in diabetic complications
iti04974
Protein digestion and absorption
iti05146
Amoebiasis
iti05165
Human papillomavirus infection
iti05200
Pathways in cancer
iti05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101965194 (Col4a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101965194 (Col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101965194 (Col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101965194 (Col4a2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101965194 (Col4a2)
09154 Digestive system
04974 Protein digestion and absorption
101965194 (Col4a2)
09158 Development and regeneration
04382 Cornified envelope formation
101965194 (Col4a2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101965194 (Col4a2)
09162 Cancer: specific types
05222 Small cell lung cancer
101965194 (Col4a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101965194 (Col4a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
101965194 (Col4a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101965194 (Col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101965194 (Col4a2)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101965194 (Col4a2)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101965194 (Col4a2)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101965194 (Col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101965194
NCBI-ProteinID:
XP_005317045
UniProt:
I3N655
LinkDB
All DBs
Position
Unknown
AA seq
1712 aa
AA seq
DB search
MGQERCAAAGPALRRWLLLGALAVGFLAQSVLAGVKKYDVPCGGRDCSGGCQCYPEKGGR
GQPGPVGPQGYTGPPGLQGFPGLQGRKGDKGERGAPGTAGPKGDVGARGVSGFPGADGIP
GHPGQGGPRGRPGYDGCNGTRGDTGPQGPSGPAGFPGSPGPQGPKGQKGEPYALSKEDRD
KYRGEPGEPGLVGFQGPPGRPGPMGPMGPVGALGRPGPPGPPGPKGQPGNRGLGFYGQKG
EKGDVGLPGPNGIPSDTFHPIDGPTKTTIHPDQYKGEKGSRGEPGIKGISVKGEEGIVGF
SGPRGPSGFDGEKGSPGQKGSRGLDGYQGTDGPRGPKGEAGDQGPPGPPVYSPHPSLAKG
ARGDPGFPGPHGEPGSRGEPGDPGPTGPPGLSFGDEDEKRGLPGEMGPKGFQGEPGIPAF
YPGPPGADGKPGLPGAPGPAGPPGPDGYLFGLKGAEGRVGYPGPSGFPGARGQKGWKGDA
GDCKCAESDQFIRGLPGLPGPKGFSGINGEPGKKGDQGDPGQHGIPGFPGFKGVSGVVGA
PGPKGIKGDSRTITTKGERGQPGVPGVHGIKGDDGVPGRDGLDGFPGLPGPPGDGIQGPP
GDAGHPGIPGTKGIPGEMGPPGLGLPGPKGERGFPGDAGLPGPPGFPGPPGPPGTPGQPD
CDTDVKRPIGGDRQETLQPGCVRGPKGLPGRPGPPGPPGTKGLRGIPGFLGADGTPGLKG
FPGDPGREGFPGPPGFMGPRGSKGAVGLPGPDGLPGPVGLPGPAGPPGERGLPGEVLGAQ
PGPRGDAGLPGHPGLKGLPGERGPPGFRGSQGMPGMPGLKGQLGFPGPSGQPGRPGPPGQ
HGFPGAPGPEGPLGRPGAPGLGGLPGDRGDPGDTGVPGPVGMKGLSGDRGDAGFSGERGH
PGTPGFKGMAGMPGIPGQKGERGSPGMHGFQGMVGLKGRSGFPGTKGEAGFFGVPGLKGL
AGEPGVKGSRGDPGPPGPPPIILPGMKDIKGEKGDEGPMGLKGYLGVKGIQGMPGIPGLA
GIPGLPGRPGHIKGAKGDIGVPGVPGLPGFPGVTGPPGITGFPGFTGSRGDKGAPGRAGF
YGEIGPTGDFGDIGDTIDLPGSPGLKGERGIAGTPGLKGFFGEKGAEGEVGFPGIAGMTG
TQGPPGPRGQTGFPGLTGLRGPQGDPGRIGVPGDKGDSGWPGVPGLPGFPGIRGISGLHG
LPGTKGFPGSPGADIHGEPGFPGPTGDRGDPGEANTLPGPTGVPGRKGEQGAPGERGPAG
SPGLQGFPGITPPSNISGSPGDKGAPGIFGLEGYRGPPGPPGPAAFPGSKGDDGSPGASG
VPGNKGWVGDPGPQGRPGVFGLPGEKGPRGEPGFMGNTGATGAVGDRGPKGPKGDQGFPG
APGSMGSPGIAGVPLTISVQPGTMGPQGRRGPPGAQGEMGPQGPPGEPGFRGAPGKAGPQ
GRGGVSAIPGFRGDQGPMGHQGPVGQEGEPGRPGIPGLPGMPGRSVSIGYLLVKHSQTDQ
EPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICYYASR
NDKSYWLSTTAPLPMMPVAEDDIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLW
IGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIP
EQSFQGTPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgggccaagagcggtgcgcggcagctggccctgccttgcggcggtggctgctgctgggg
gccttggcagtggggttcctggcccagagcgtcttggcgggtgtaaagaagtacgatgtg
ccctgcggagggagagactgcagcggcggctgccagtgctacccggagaaaggaggacgc
ggtcagccagggccagtgggcccccagggctacaccgggcctcccgggctgcagggcttc
ccagggctgcagggccgcaaaggcgacaagggcgaaagaggagcccccgggaccgcggga
cccaaaggagacgtgggagcaagaggtgtctctgggttccctggtgccgatggaattccg
ggacacccaggccaaggcgggccccggggccggcctggctatgacggctgcaatgggacc
aggggagacacaggcccgcaaggaccctccggccccgcgggctttcctggctcccccggg
ccccaaggacccaaaggacagaaaggtgaaccttatgcactgtctaaagaggaccgcgac
aaatacaggggtgaacccggagagcctggactggtcggattccagggtcctcctggccgc
cctgggcctatggggccgatgggtccagttggagcccttggaagacccggaccacccgga
ccccctggacccaaaggacagccaggcaacagaggactgggcttctatggacagaagggt
gagaagggcgacgtgggactgccaggacccaacgggatcccgtcagacaccttccacccc
atcgatgggcccaccaagacgaccatccacccggatcagtacaagggcgaaaagggaagc
cggggggagccgggcataaagggcatctccgtgaagggagaggaaggcatcgtcggcttt
tcaggaccgcggggcccttctggcttcgatggagagaaaggatccccaggacagaaagga
agccgggggctggatggctaccagggcacggatgggccccgaggacccaagggggaagca
ggtgaccagggtcccccaggaccacctgtctactcgcctcatccttccctggctaaaggt
gccagaggtgacccaggattcccaggacctcatggggagccaggaagccgcggtgagcca
ggagaccccgggcccacaggaccccctggcctgtcctttggagatgaagatgagaagaga
ggcctcccaggggagatgggacccaaaggcttccaaggagaacctggcatccctgcattc
taccctggccctcccggagctgacggaaagcctggtctcccaggagccccggggcctgcc
ggaccacctggaccagatggttacctgtttggtcttaaaggagcagaaggacgtgtgggc
taccctgggccttccggtttcccaggagctcgtgggcagaagggatggaaaggtgacgct
ggggactgtaaatgtgcagaaagtgaccagttcatcaggggtcttccaggactgccagga
cccaaaggtttctcgggtatcaatggggaaccagggaagaaaggggaccaaggagacccc
ggacagcacggcatccctgggttcccagggttcaagggggtctctggtgtcgtcggtgct
cctgggcccaagggaatcaaaggggattccagaacaataaccactaaaggtgagagagga
cagcccggcgtcccaggtgtgcatggaataaaaggcgacgacggtgtccctgggcgcgac
ggactcgatggattcccgggcctcccaggccctcctggggatggcatccaaggtccccca
ggggacgcaggtcacccaggcatacctggaaccaagggtattccaggagaaatgggcccc
ccaggactgggcttaccaggccctaagggcgagcgtggattccctggagacgctgggcta
cctggaccgccaggcttccccggtcctcctgggcccccgggaaccccaggacagccagat
tgtgacacagatgtcaaaaggcccattggaggtgacagacaagagaccttgcagccaggt
tgtgtcagaggccccaaaggactgcctggccggccaggacccccaggacccccaggcacc
aaaggcctcagagggatcccgggcttcttaggagctgatggaacaccagggctcaagggc
tttcctggagacccaggccgggaagggttcccaggacccccagggttcatgggacctcga
ggatccaaaggtgctgtgggcctccctggcccagatggactcccaggccctgtgggcctg
cctggaccagctggaccccctggggagaggggactgccaggagaagttctaggggcccag
cctgggccccggggagatgctggactacctggacacccggggttgaaaggtcttccagga
gagagaggcccccctggattcagaggaagccaggggatgcccggaatgccagggctgaag
ggtcagctgggcttcccgggaccttcgggccagccaggacggcccgggcctccaggacaa
catggattcccaggagctcctggcccagaggggcccttgggtcggccaggtgccccaggc
ctcggaggacttcctggagataggggggaccctggtgacacaggcgtccctggccctgtg
ggcatgaaaggtctctctggagatagaggagatgctggcttctcaggcgagcgaggccac
ccaggaacccctgggtttaaaggaatggctggaatgcctggtatccctgggcaaaaaggg
gagagaggttctcctgggatgcacggcttccaaggcatggtggggctcaaaggaagatct
gggttcccaggaaccaaaggagaggcaggattttttggagtgcctggtctgaagggcctg
gctggagagcctggtgtgaaaggcagccgtggagaccctggtcccccaggaccacctccc
atcatcctgccagggatgaaggacatcaaaggggagaagggcgatgaagggcccatgggc
ctgaaggggtacctgggcgtgaaaggaatccaagggatgccggggatccccgggctggca
ggaatcccagggctgcctggaaggcccggccacatcaagggagccaaaggagacatcgga
gtccctggcgtaccaggtctgccaggattccctggagtgaccggcccccctggaattaca
ggattcccagggttcacaggaagccggggtgacaaaggtgctcctgggagagccggcttt
tacggagagattggccctactggggactttggtgatattggggataccatagacttacca
ggaagtccaggcctgaagggagaacgaggcatcgccggaactccaggtctgaaggggttc
tttggagagaagggagcagagggtgaagttggcttccctgggatagcaggcatgactgga
acccaaggccctcctggacccagaggacaaacaggcttcccagggctaacagggctgcgg
gggccacagggagatccagggcggatcggagtccccggcgataaaggcgactctggctgg
cctggcgtgccaggcttaccaggcttcccgggaatccgagggatcagcggattacacggc
ctgccgggcaccaaaggcttcccagggtccccaggtgctgacatccacggagaaccagga
ttcccaggacctactggggacaggggtgacccaggagaggccaacacccttccaggcccc
acaggagtcccaggacggaaaggggagcagggagccccaggggagcgaggtccagccggg
agtccaggactccaggggttccctggtatcacccccccttccaacatctctgggtcacca
ggtgacaaaggcgcaccaggcatatttggcctagaaggctaccgaggcccaccagggcca
cctgggcctgcagcctttcctgggagcaaaggagatgatgggagtccaggagcttcagga
gtccctgggaacaaaggctgggtcggggacccaggcccacagggccggcctggtgtgttt
ggtctcccaggagaaaaaggccccaggggcgaaccaggattcatgggcaacactggagcc
accggcgctgtgggcgaccgaggccccaaggggcccaaaggagaccagggattccctggt
gcccctggttctatgggatccccagggattgcaggagtccccctgacaatttctgtccag
cctgggacgatgggcccccagggaaggagaggtcctcctggggcacagggggagatgggg
ccccaaggccctcctggagagccaggttttcgaggagctccagggaaggctggaccgcag
ggaagaggcggtgtgtctgctatcccagggttccgaggagaccaagggcctatggggcac
cagggaccagttggccaagaaggggagccaggccgtccagggatcccaggcctgccgggc
atgccaggccgcagcgtcagcatcggctacctcctggtgaagcacagtcagacggaccag
gagcccatgtgccccgtgggcatgaacaagctctggagcggatacagcctgctgtacttt
gaaggccaagagaaagcccacaaccaggacctggggctggcgggctcctgcctggcgcgc
ttcagcaccatgcccttcctgtactgcaacccgggcgacatctgctactatgccagccgc
aacgacaagtcctactggctctccaccacggccccgctgcccatgatgccggtggccgag
gacgacatcaagccctacatcagccgctgctccgtgtgtgaggccccagcagtggccatc
gcagtccacagtcaggacgtctccatcccccactgccccgccggctggcgcagcttgtgg
atcggctattccttcctcatgcacactgcggctggggacgaaggcggtggccagtcactg
gtgtcgccaggcagctgcctggaggacttccgcgccacgccgttcatcgagtgcaacggg
gcccgtgggacctgccactactacgccaacaagtacagcttctggctgaccaccatcccc
gagcagagcttccagggcacgccctcggcggacacgctcaaggccggcctcatccgcacg
cacatcagccgctgccaggtgtgcatgaagaacctgtga
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integrated database retrieval system
