Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101965690
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Entry
101965690 CDS
T10664
Symbol
Pcdh18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
iti04515
]
101965690 (Pcdh18)
Cell adhesion molecules [BR:
iti04515
]
Cadherins
Protocadherins
101965690 (Pcdh18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
TMEM154
BBS1
PAH
Syndecan
MPS-4
Cadherin_C_2
DUF3418
Motif
Other DBs
NCBI-GeneID:
101965690
NCBI-ProteinID:
XP_005340186
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MHQMDTKMHFTFAFALLIMSLNREVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPN
PSAVRFRAMQRGNSPLLVVNENTGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQL
FHIEVEVLDINDNSPQFSRSLIPIEISESAAVGTHIPLDSAFDPDVGENALHTYSLSAND
FFSIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDMGVPQRSGSSILKISISDSN
DNSPAFEQQSYVIQLLENSPVGTLLLDLNATDPDEGANGKIVYSFSSHVSPKIIETFKID
SERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEINLNLMS
PGKEEISYIFEGDPIETFVALVRVQDKDSGLNGEVVCKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGTPSLSTVKHFTVQINDINDNPPRFQRSRYEFVISENNSP
GAFITTVTATDPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQ
ITFVVEARDGGSPKQLVSNTTVVLTIIDENDNVPVVIGPALHNNTAEISIPKGAESGFHV
TRIRAIDRDSGINAELSCSIVAGNEEGIFVIDPRSCDIHTNVSIESVPHTEWELSVIIQD
KGNPQLHTKVLLKCMIFEYAESVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLF
ATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPS
SSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEG
FSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPSQPQQ
QHAHQSLEDDPQAAEGGEKKKSFSTFGKDSPADEDPGDTSTSSLLSEMSSVFQRLLPPSL
DTYPECSEVDRSNSLERRKGPAPTKTVGYPPGVAAWAASTHFQNPTSNPGPALGTHSSVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaaatggatactaaaatgcactttacgttcgcttttgcactcctgatcatgtct
ctgaaccgcgaggtactgggcaagaatctgaaatacaggatttatgaggagcagagggtt
ggatcagtaattgcaagactatcagaggatgtagctgatgttttactgaagctaccgaat
ccttctgctgttcgttttcgagccatgcagagggggaattctcctctactggtagtcaat
gagaataccggggaaatcagcataggagctacaatcgaccgcgagcaactgtgccagaaa
aacttgaactgttccatagagtttgatgtgatcactctacccacagagcatctgcagctc
ttccatattgaagtcgaagtgctggatattaatgacaattctccccagttttcaagatct
ctcatacctattgagatatccgagagcgcggcagtggggactcatattcccctggacagt
gcatttgatccagatgttggagaaaatgccctccacacctactccctctctgccaatgat
ttttttagcatcgaggttcggaccaggactgatggtgccaagtatgcagaactcatagtg
gtcagagagttggatcgggagctgaagtccagctacgagctccagctcactgcctcagac
atgggagtgcctcagaggtctggctcctccatactgaaaataagcatttcggactccaat
gacaacagccctgcttttgagcagcagtcttatgtaatacaactcttagaaaactccccg
gtgggcactttgctcctggatctgaatgccactgatccagatgagggcgctaatgggaaa
attgtctattctttcagcagtcatgtgtctcccaaaattatagagactttcaaaattgat
tcagaaagaggacatttgactcttttcaagcaagtggattatgaaatcaccaaatcctat
gagatcgatgtccaagctcaagatctgggtccaaattcaatcccagctcattgcaaaatt
ataattaaggttgtagatgtgaatgacaataaaccagaaattaacctaaacctcatgtca
cctggcaaagaagaaatatcttatattttcgaaggggatcctattgaaacatttgttgct
ttggtcagggttcaagacaaagattctgggctgaatggagaagtagtttgtaagcttcat
ggacatggtcactttaaacttcaaaagacttatgaaaacaattatttaatcttgaccaat
gccactctggatagagaaaagagatctgaatatagtttgactgtaatcgctgaggataaa
ggaacacctagtctctctacagtcaaacattttactgttcaaatcaatgatataaatgac
aatccaccacgcttccagagaagccgatatgaatttgtaatctcggagaataactcgcca
ggggcatttatcaccactgttacagccacagatcctgatcttggagaaaatgggcaagtg
acatataccattttggagagctttatcctgggaagttccataactacatatgtaaccatt
gacccatccaatggagctatttatgccctcagaatctttgatcatgaagaagtgagtcag
atcacttttgtggtggaagcgagagacggagggagtccgaagcaacttgtaagcaatacc
actgttgtgctcaccatcattgatgaaaatgacaatgttcctgtggtgatagggcctgca
ctgcacaataatactgcagagatctccatccccaaaggagctgaaagtggctttcatgtc
accagaataagggccattgacagggactctggtatcaatgctgagctcagctgctccata
gtagcaggtaatgaggagggtatcttcgtaattgatccacgatcatgtgacatccacacc
aatgtgagcatagaatctgttccccacacagaatgggagctctcagtcatcatccaggac
aaaggcaatcctcagctgcataccaaagtccttctgaagtgcatgatctttgaatatgca
gaatcagtgacaagtacagctatgacctcagtcagccaggcatccttggatgtctccatg
attataattatttccttaggagcaatttgtgcagtgctattggttattatggtgctattt
gcaactaggtgtaaccgagaaaagaaagacactagatcctacaactgcagagtagcagaa
tcaacttaccagcatcaccctaaaagaccatccaggcagattcacaagggggacatcaca
ttggtgcctaccataaatggcactcttcccatcagatcccatcacagatcatccccatct
tcatctcctaccttagaaagagggcagatgggcagccgccagagtcacaacagtcaccag
tcactcaacagtttggtgacaatctcatcgaaccatgtgccggagaatttctcattagaa
ctcacccacgccactcctgctgttgagcaggtctcccagcttctttccatgcttcaccaa
gggcaatatcagccaaggccaagttttcgaggaaacaaatactccaggagttatagatat
gcccttcaagacatggacaaatttagcttgaaagacagtggccgtggtgacagtgaagca
ggagacagtgattatgatttggggagagattctccaatagacaggctactgggtgaggga
ttcagtgacctgtttctcacagatggaagaattccagcagctatgaggctgtgcacagag
gagtgcagagtcctgggccactctgaccagtgctggatgcccccgctgccctcgccttcc
tcggactacaggagcaacatgttcattcctggggaggagttcccgtcgcagccccagcag
cagcatgcccatcagagcctggaggacgacccccaggctgcagaaggcggtgagaagaag
aagagtttctccaccttcgggaaggactccccagccgacgaggacccgggggacaccagc
acgtcctccctgctctcggaaatgagcagcgtgttccagcgcctcttgcccccttccctg
gacacctaccccgagtgcagcgaggtggatcggtccaactccctggagcgtcggaaggga
ccagcgcccacaaaaaccgtgggttacccaccaggggtggcggcctgggcagccagtacc
cacttccaaaatcccaccagcaaccctgggcccgcgctgggaacccactcgagcgtgcag
ccttcttccaagtggctgccagccatggaggagatccctgagaattatgaagaagacgat
tttgacaatgtgctcaaccacctgaacgatgggaagcacgaactcatggatgccagtgag
ctggtggctgagatcaacaaactgctccaggacgtgcgccagagctag
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integrated database retrieval system
