Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101966052
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Entry
101966052 CDS
T10664
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101966052 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101966052 (Xab2)
03041 Spliceosome [BR:
iti03041
]
101966052 (Xab2)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101966052 (Xab2)
Spliceosome [BR:
iti03041
]
Complex B
Other components
Prp19-related factors
101966052 (Xab2)
Complex C
101966052 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
101966052
NCBI-ProteinID:
XP_005332166
UniProt:
I3MTG7
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgtctcgcggcccgagcggcccgaccttgtctttgaagaagag
gaccttccctatgaggaggaaatcatgcggaaccagttttcagtcaaatgctggctccgc
tacattgaattcaaacagggagctcccaagcccaggctcaatcagctgtatgagcgggca
ctcaagctgctgccctgcagctacaaactctggtaccgctacctaaaggcacgtcgggca
caggtaaagcatcgctgcgtgactgaccctgcctatgaagatgtcaacaactgccatgag
agggcctttgtgtttatgcacaagatgccccgtctatggctagattattgtcagttcctg
atggatcagggacgtgtcacacacacccgccgcaccttcgaccgtgccctccgggcacta
cccatcacccagcactctcgtatttggcccctatacctgcgcttcctgcgctcccaccca
ctgcctgagacagctgtgcgaggatatcggcgtttcctcaagctgagtccagagagtgct
gaggaatacatcgagtacctcaagtcgagtgaccggctggacgaggctgcacagcgcctg
gccactgtggtgaatgatgagcgctttgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctgtgtgacctcatctcccagaatccagacaaggtgcagtccctcaacgtg
gacgccatcatccgcggtggcctcacccgtttcaccgaccagctgggcaagctgtggtgt
tcactggctgactactacatccgcagtggccactttgagaaggcccgggacgtgtacgag
gaggccatccgcactgtgatgaccgtgcgggacttcacacaagtgtttgacagctatgcc
caatttgaggaaagcatgattgctgccaagatggagactgcctcagagctggggcgggag
gaggaggatgacgtggacctggagctgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaatagtgtcctgctgcgccagaacccacaccacgtccatgagtgg
cacaagcgtgtggccctgcaccagggccgccctcgggagatcatcaacacctatacggaa
gccgtgcagacggtggaccccttcaaggctacaggcaagccccacactctgtgggtcgca
tttgccaagttttatgaggacaacgggcagctggacgacgcccgcatcatcttggagaag
gccaccaaggtgaactttaagcaggtggatgacctggcaagtgtgtggtgccagtgcggg
gaactggagctccggcacgagaactatgatgaagccctgcggctgctgcggaaggcgaca
gcgctgcccgcacgcagggctgagtactttgatggctcagagcccgtgcagaaccgcgtg
tacaagtccctgaaggtgtggtcgatgctggccgacctggaggagagcctgggcaccttc
cagtccactaaggctgtgtacgaccgtatcctggacctgcgcatagccacgcctcagatc
gtcatcaactacgccatgttcctggaggaacacaagtactttgaggagagcttcaaggcc
tacgagcgtggcatctccctgttcaagtggcccaatgtgtctgacatctggagcacctac
ctgaccaaattcatcgcccgctacggaggccgcaagctggagcgggcacgggacctcttt
gagcaggcgctggatggctgcccacccaaatacgctaaaaccctgtacctactgtatgcg
cagctggaagaggagtggggcctggcccggcatgccatggctgtgtatgatcgtgccacc
agggctgtggaacccgctcagcagtatgacatgttcaacatctacatcaagagggctgct
gagatctacggtgtcacccatacccgtggcatctaccagaaggccattgaggtgctgtca
gatgagcatgcgcgggagatgtgcctgcggtttgcagacatggagtgcaaactcggcgag
attgaccgcgccagggccatctacagcttctgctcccagatatgtgacccccggaccact
ggggcattctggcaaacgtggaaggactttgaagttcggcacggcaacgaggacaccatc
agggagatgctgcggatccgtcgcagtgtgcaggccacatataacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagtgcgacaggcacagtgtctgacctggcc
cctgggcagagcggcatggatgacatgaagctgctggagcagcgggcagagcagctcgcg
gccgaggctgagcgggaccagcccccacgggcccagagcaagattctttttgtgaggagt
gacgcgtctcgagaggagctggcagagctggctcagcaagccaatcccgaggagatccag
ctgggtgaagatgaggacgaggacgagatggacttggagcccaacgaggttcggctggag
cagcagagcgttccagccgctgtgtttgggagcctgaaggaagactga
DBGET
integrated database retrieval system
