Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101966557
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Entry
101966557 CDS
T10664
Symbol
Smarcad1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
101966557 (Smarcad1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
iti03036
]
101966557 (Smarcad1)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101966557 (Smarcad1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
CUE
TTC3_9th
Motif
Other DBs
NCBI-GeneID:
101966557
NCBI-ProteinID:
XP_005337612
UniProt:
I3LY74
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MNLFNLDRFRFEKRSKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
EKTEDSSVPETPDNERKASISHFKNQRGIQYIDLSSDSEDVVSPNCSSTVQEKKFNKDTV
IIVSEPSEDEESQGLPTVAQRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNEDQSLKKTRLDHGEESN
ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDTSQ
FSSQSEVPNGKEVSSRSQNCPKNVAKTKLKQKFSMKQQNGFNKKRKKNVFNPKKVIEDSE
YDSGSDVGSSLDEDYSSGEEMMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELR
PFNSWEALFTKMSKTNGLSEDLIWNCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGN
GGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL
YQEGNKGPHLIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHSKYEDYNV
IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP
VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFI
LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRMKKSINNMEKNTEMCNVMMQLR
KMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRH
INNFQLDMDLILDSGKFRVLGCILSELKQKGNRVVLFSQFTMMLDILEVLLKHHQHRYLR
LDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQA
EDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATL
LKTSMGL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaatttggaccgttttcgctttgagaaaaggagtaagattgaggaagct
cccgaagcaaccccccagccttcccagcccggcccttcttcaccaatttctcttagtgct
gaagaggagaatgctgaaggggaagttagcagggcaaacacccctgattcagatataact
gaaaaaacagaagattctagtgttccagaaactccagataatgaaaggaaagcaagtata
tcgcatttcaagaatcaaagaggaatacagtacattgatttgtcttctgatagtgaagat
gttgtttccccaaattgctccagtaccgttcaagagaaaaaattcaacaaagacacagtg
attatagtgtctgagccatctgaagatgaagagtcccaaggccttcctaccgtggcacaa
agaaatgatgatatttcagaattggaagacctttcagaattggaagaccttaaagatgct
aaacttcagaccttgaaggaactttttccacaaagaagtgacaatgatttacttaagttg
attgaatcaacaagcactatggatggggcaattgctgctgccttgctgatgtttggtgac
gcaggtggtgggcccaggaaaagaaaattatcatcttcttcagagccatatgaggaggat
gaatttaacgaagatcagtctttaaaaaagacaagactggatcatggggaagaatcaaat
gagtctgcagaatctagcagtaattgggaaaagcaagaaagcattgtattgaaattgcaa
aaagaatttccaaattttgataaacaagaactaagagaagtactcaaggaacatgaatgg
atgtacacagaagctctggaatctttaaaagtgtttgcagaagatcaagatacatcgcaa
ttttcatcacaaagtgaggttccaaatggaaaagaagtttcttcaagaagtcaaaattgt
cctaaaaatgtagctaaaacaaaactaaaacagaaattttcaatgaaacaacaaaatggt
tttaacaaaaaacgtaaaaaaaatgtatttaatcctaagaaagtgattgaagactctgaa
tatgattcaggttctgatgtcggtagttcactagatgaggactacagtagtggtgaagaa
atgatggaggatggatataaaggtaaaattcttcacttccttcaggatgcttcaattggt
gaacttactttaattcctcagtgttctcagaagaaagctcagaagataacagaactccgg
ccctttaatagttgggaagctctgttcacaaagatgtccaaaacgaatggcttatcagaa
gatttaatatggaactgtaaaacactgattcaagaaagggatgtagttataagacttatg
aacaagtgtgaagatatttcaaacaaattaaccaaacaagttaccatgcttactggaaat
ggaggtggatggaatatagaacaaccttccattctaaaccaaagtttgtcactcaagccc
tatcagaaagttggtttgaattggctggcgttggtacataaacatggacttaatggcatt
ttggcagatgaaatgggcctaggaaaaacgattcaagccattgcattccttgcatacctc
tatcaggagggtaataaaggtcctcatttgattgttgttccagcctcaactatagataac
tggttaagggaagttaatttatggtgccctactttaaacgtgctctgttactatggttct
caagaagaacgtaaacaaattagatttaacattcatagtaaatatgaggattacaatgta
attgtgactacgtataattgtgcaatcagcagttctgatgaccgcagtctgtttcggcgg
ctaaaacttaattatgctatttttgatgagggtcatatgctgaagaatatgggttctatc
cgataccagcaccttatgacaattaatgcaaataaccgtttactgctcacaggcacacct
gtgcagaataacctgttagaactcatgtcactgttgaattttgttatgccacacatgttt
agtagtagcaccagtgaaatacgaagaatgttttcttctaagacaaaatcagcagatgag
cagagtatatatgaaaaggagagaatagcacatgcaaaacagattataaagccatttatt
ctcagaagagtgaaagaagaggttctcaagcaactaccccctaagaaagatcaaattgag
ttgtgtgcaatgtcagagaaacaggagcaactctacttgggtcttttcaacagaatgaaa
aaatctatcaataacatggagaaaaacacagaaatgtgcaatgtcatgatgcaattgaga
aaaatggccaatcatcctttattacatcgccaatattacacagctgaaaaactcaaggaa
atgtctcagcttatgctaaaggaacctacacattgtgaggctaaccctgacctgatcttt
gaagacatggaagttatgacagactttgaactacatgtactttgtaaacagtatcggcac
attaataatttccagttagacatggatttgattttagattctggaaaattccgagtttta
ggatgcatcttatctgaattgaagcagaagggtaatcgagttgtattatttagccagttt
accatgatgctggacattttagaggttctgttaaaacatcatcagcataggtacctcaga
ttagatggaaagactcagatttctgaaaggattcatctaattgatgagtttaataccgat
atggatatctttgtgtttctgttgtcaacaaaagctggtggattaggaataaatttgact
tcagcaaatgttgttatacttcatgatattgattgtaatccctacaatgacaaacaagca
gaagataggtgccatagagttggccagactaaagaagtactagttataaaattaataagc
caagggacaattgaagaatctatgctaaaaattaaccaacagaaattgaaactagaacaa
gatatgaccacagtagatgaaggtgatgaagggagcatgccagcagatatagccacatta
ttaaaaacgtccatgggcctgtga
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