KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101966983
Entry
101966983         CDS       T10664                                 
Symbol
Sdc1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04512  ECM-receptor interaction
iti04514  Cell adhesion molecules
iti04820  Cytoskeleton in muscle cells
iti05144  Malaria
iti05205  Proteoglycans in cancer
iti05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:iti00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101966983 (Sdc1)
   04514 Cell adhesion molecules
    101966983 (Sdc1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101966983 (Sdc1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    101966983 (Sdc1)
  09174 Infectious disease: parasitic
   05144 Malaria
    101966983 (Sdc1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    101966983 (Sdc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:iti04131]
    101966983 (Sdc1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:iti04090]
    101966983 (Sdc1)
   00535 Proteoglycans [BR:iti00535]
    101966983 (Sdc1)
Membrane trafficking [BR:iti04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    101966983 (Sdc1)
CD molecules [BR:iti04090]
 Proteins
  101966983 (Sdc1)
Proteoglycans [BR:iti00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   101966983 (Sdc1)
SSDB
Motif
Pfam: Syndecan Romo1 Podoplanin
Other DBs
NCBI-GeneID: 101966983
NCBI-ProteinID: XP_005322668
UniProt: I3NFD8
LinkDB
Position
Unknown
AA seq 311 aa
MRRAALWLWLWLCALALRMQPALPQIVATNVPPEDQDSSGDDSDNFSGSGAGALPDITLP
RQSPSTWKDMWLLTTTPRAPEPTARDATAASTSVLPVGERPREGEAVILAEAQPDLTAHG
EETAPEPRETTQLPTTQRASTARASTVQAPATSHPHRDMQPGHHETSAPTAPEQPDSHMP
SVESGGASPTERTAEDQLPAGEGSGEQDFIFEASEETTAVVPVQPDHRNQPPVDPETTGA
TGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAY
QKPTKQEEFYA
NT seq 936 nt   +upstreamnt  +downstreamnt
atgaggcgcgcggcgctctggctctggctctggctctgcgcgctggcgctgcgcatgcag
ccggcgctgccgcaaattgtggccacaaatgtgcctcctgaagatcaggacagctctggg
gatgactccgacaacttctctggctcaggtgcaggtgctttgccggatatcaccttgccc
cggcagagcccgtccacctggaaggacatgtggctcctgaccaccacgcccagggctcca
gagcctaccgccagggacgccacggctgcctccacctccgtcctgccggttggagagagg
cccagagagggagaggccgtgatcctcgcagaagcccagcctgacctcactgcccacggg
gaggagaccgccccagaacccagggagaccacacagctcccgaccactcagcgggcctca
acagccagagccagcactgtccaggcacctgccacctctcatccccacagggacatgcag
cctggccaccatgaaacttcagctcctacagcacctgagcagccagactctcatatgccc
agtgtggagtctggaggtgcttctcccaccgagaggactgctgaggatcagcttccagca
ggagagggttctggggagcaggacttcatctttgaagcatctgaggagaccacagctgtg
gtaccggtacagcccgaccaccggaatcagccccccgtggatccagagaccacaggggcc
acaggggcctcacagggcctcctggacaggaaggaagtactgggaggggtcattgccgga
ggcctggtggggcttatctttgctgtgtgcctggtcggtttcatgctgtaccggatgaag
aagaaggatgagggcagctactctttggaggagccgaaacaagccaacggcggcgcctac
caaaagcctaccaaacaggaagagttctatgcctga

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