KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101967128
Entry
101967128         CDS       T10664                                 
Symbol
Rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03320  PPAR signaling pathway
iti04148  Efferocytosis
iti04151  PI3K-Akt signaling pathway
iti04659  Th17 cell differentiation
iti04919  Thyroid hormone signaling pathway
iti04920  Adipocytokine signaling pathway
iti04928  Parathyroid hormone synthesis, secretion and action
iti04932  Non-alcoholic fatty liver disease
iti04976  Bile secretion
iti05160  Hepatitis C
iti05200  Pathways in cancer
iti05202  Transcriptional misregulation in cancer
iti05207  Chemical carcinogenesis - receptor activation
iti05216  Thyroid cancer
iti05222  Small cell lung cancer
iti05223  Non-small cell lung cancer
iti05226  Gastric cancer
iti05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:iti00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    101967128 (Rxra)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    101967128 (Rxra)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    101967128 (Rxra)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    101967128 (Rxra)
   03320 PPAR signaling pathway
    101967128 (Rxra)
   04919 Thyroid hormone signaling pathway
    101967128 (Rxra)
   04928 Parathyroid hormone synthesis, secretion and action
    101967128 (Rxra)
  09154 Digestive system
   04976 Bile secretion
    101967128 (Rxra)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    101967128 (Rxra)
   05202 Transcriptional misregulation in cancer
    101967128 (Rxra)
   05207 Chemical carcinogenesis - receptor activation
    101967128 (Rxra)
  09162 Cancer: specific types
   05226 Gastric cancer
    101967128 (Rxra)
   05216 Thyroid cancer
    101967128 (Rxra)
   05222 Small cell lung cancer
    101967128 (Rxra)
   05223 Non-small cell lung cancer
    101967128 (Rxra)
  09172 Infectious disease: viral
   05160 Hepatitis C
    101967128 (Rxra)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    101967128 (Rxra)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    101967128 (Rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:iti03000]
    101967128 (Rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:iti03310]
    101967128 (Rxra)
Transcription factors [BR:iti03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    101967128 (Rxra)
Nuclear receptors [BR:iti03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   101967128 (Rxra)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 101967128
NCBI-ProteinID: XP_005337007
LinkDB
Position
Unknown
AA seq 439 aa
MAAPSLHPSLGPGIGSSLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTP
TLGFGTGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE
AVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPND
PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG
ILLATGLHVHRSSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL
SNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG
DTPIDTFLMEMLEAPHQTT
NT seq 1320 nt   +upstreamnt  +downstreamnt
atggcggccccctcgctgcacccctccctggggccaggcatcggctcctcgctgggctcc
cctgggcagctgcactcgcccatcagcaccctgagctcccccatcaacggcatgggcccg
cccttctcggtcatcagctcccccatgggcccccactccatgtctgtgcctaccacgccc
accctgggctttggcaccggcagcccccagctcaactcgcccatgaaccccgtcagcagc
agtgaggacatcaagcccccgctgggcctcaatggcgtcctcaaggtccccgcccacccc
tcaggaaacatggcgtctttcaccaagcacatctgtgccatctgtggggaccgctcctca
ggcaagcactacggggtgtacagctgtgagggctgcaagggcttcttcaagaggacagtg
cgcaaggacctgacctacacctgccgtgacaacaaggactgcctgattgacaagcggcag
cggaaccggtgccagtactgccgctaccagaagtgcctggccatgggcatgaagcgggaa
gctgtgcaggaggaacggcagcggggcaaggaccggaacgagaacgaggtggagtcaacc
agcagcgccaacgaagacatgccagtggagaagattctggaagctgagttggctgtcgag
cccaagacggagacctacgtggaggcgaacatgggcctgaaccccagctcgcccaatgac
cccgtcaccaacatctgccaggcagctgacaagcagctcttcacgctggtggagtgggcc
aagaggatcccacacttctccgagctacccctggacgaccaggtcatcctgctgcgggca
ggctggaacgagctgctcatcgcctctttctcccaccgctccattgccgtgaaggatggg
atcctgctggccaccgggctgcacgtccacaggagcagtgcccacagcgcaggggtgggc
gccatctttgacagggtgctgacggagctggtgtccaagatgcgggacatgcagatggac
aagaccgagctgggctgcctgcgggccatcgtcctctttaaccccgactccaaggggctc
tcgaacccggcagaggtggaggcgctgagggagaaggtgtacgcgtccctggaggcttac
tgcaagcacaagtaccccgagcagcctggcaggttcgccaagctcctgctgcgcctgccg
gccctgcgctccatcgggctcaagtgcctggagcacctcttcttcttcaagctcatcggg
gacacgcccatcgacaccttcctcatggagatgctggaggccccacaccagaccacctag

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