Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101967312
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Entry
101967312 CDS
T10664
Symbol
Atg2b
Name
(RefSeq) autophagy-related protein 2 homolog B isoform X1
KO
K17906
autophagy-related protein 2
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04136
Autophagy - other
iti04140
Autophagy - animal
iti05010
Alzheimer disease
iti05014
Amyotrophic lateral sclerosis
iti05016
Huntington disease
iti05017
Spinocerebellar ataxia
iti05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101967312 (Atg2b)
04136 Autophagy - other
101967312 (Atg2b)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
101967312 (Atg2b)
05014 Amyotrophic lateral sclerosis
101967312 (Atg2b)
05016 Huntington disease
101967312 (Atg2b)
05017 Spinocerebellar ataxia
101967312 (Atg2b)
05022 Pathways of neurodegeneration - multiple diseases
101967312 (Atg2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101967312 (Atg2b)
03029 Mitochondrial biogenesis [BR:
iti03029
]
101967312 (Atg2b)
Membrane trafficking [BR:
iti04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
101967312 (Atg2b)
Mitochondrial biogenesis [BR:
iti03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
101967312 (Atg2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG2_CAD
DUF7054
Motif
Other DBs
NCBI-GeneID:
101967312
NCBI-ProteinID:
XP_021587747
LinkDB
All DBs
Position
Unknown
AA seq
1985 aa
AA seq
DB search
MVFRPRPRLATGSEPMYWSSFMTSSMQLAKECLSQKLTDEQGEGSQPFEGLEKFAETIET
VLRRVKVTFIDTVLRIEHVPENSKTGTALEIRIERTVYCDETADESSGINVHQPTAFAHK
LLQLSGVSLFWDEFSASAKSSPVCSTAPVENEPKLSPSWNPKIVYEPHPQLTRNLPEIAP
SDPVQIGGLIGRLELSLTLKQNEVLPGAKLDFDGQIDSIHLFLSPRQVHLLLDMLAAIAG
PENSSKIGLANKDRKNRPMQQEDEYRIQMELNRYYLRKDSLSVGVSSEQSFYETETARTP
SSREEEVFFSMADMDMSHSLSSLPPLGDPPNMDLELSLTSTYTNTPAGSPLSATVLQPTW
GEFLDHHKEQPVRGSAFPSNLVHQTSLQKAALPSRSVSMDESRPELIFRLAVGTFSVSVL
HIDPLSPPETSLSLNPLTPMAIAFFTCIEKIDPARFSSDDFKSFRTVFAEACSHDHLRFI
GTGIKVAYEQRQRSASRYFSTDTSIGQMELLECLFPTDCHSVPPHYTELLTFHSKEGTDA
HPPVCLQLHYKHSENRGPQGNQARLSSVPQKADLQIKLNPVCCELDISIVDRLNSLLQPQ
KLTTVEMMASHMYTSYNKHISLHKAFTEVFLDDSHNPANCRVSVQVATPALNLSVRFPIP
DLRSDQERGPWFKKSLQKEILHLAFTDLEFKTEFIGGSTPEQIKLELTFRELAGSFQEEK
GEPSVKFFHVSGGVDGDTASSDDFDWPRMVLKINPPAMHSILERIAAEEEEENGHYQEEE
EGGAHSLKDVCDLRRPAPSPFSSRRVMFENEQMVMPGDPVEMVEFQDKAISNSHYVLELM
LPNIHVTLPNKSFYERLYNRIFNDLLLWEPTAPSPVETFENISYGIGLSVASQLINTFNK
DSFSPFKSTVHYDEESGSEEETLQYFSTVDPNYRSRRKKKLDSQNKNSQSFLSVLLNINH
GLMAVFTDVKQDNGDLLENQHGEFWLEFNNGSLFCVTKYEGFDDKHYICLHSSSFSLYHK
GVVDGAVLPTETRLPCSTRPHWLEPTIYSSEEDGLSRTASDGVGGDNLNMLSVAVKILSD
KSESNTKEFLIAVGLKGATLQHRMLPSGLSWHEQILYFLNIADEPVLGYNPPTSFTTFHV
HLWSCALDYRPLYLPIRSLLTVETFSISSSVALDKSSSTLRIIMDEAALHLSDKCNTVTV
NLSRDYVRVMDMGLLELTITAVKSDSDREQTEPRFELHCSSDVVHIRTCSDSCAALMNLI
QYIASYGDLHAPGKAERKPGGPQRKSKVGSSGGSSSRGPVLPEADQQVLRDLMSDAMEEV
DMQQTTSSIKPQANGVMDEKSQIQEPCCSDLFLFPDESGNVSHEPGPTYASFTHHLISDA
MSGVPTENDDFCILFAPKAAIQEKEEEPVIKIMVDDAIVIRDNYFSLPVKKTDTSKAPLH
FPIPVIRYVVKEVSLVWHLYGGKDFGTVPPTSPAKSYISPHSSPSHTPTRHGRNTVCGGK
GRNPDFLMEIQLSKVKFQHEVYPTCKAECDSSLLEQPVSRQVFIVQDLEIRDRLATSQMN
KFLYLYCSKEMPRKAHSNMLTIKALHVRPESGRSPQECCLRVSLMPLRLNIDQDALFFLK
DFFTSLSAEVELLLTPDPEVKKSPGADVTCSLPRHLSISKEPNLVLSFPGPKLSQNESAS
AADAVNGAEEKDFSAEEASFSDQPVFFREFRFTSEVPIRLDYHGKHVSMDQGTLAGILIG
LAQLNCSELKLKRLFYRHGLLGVDKLFSYAITEWLNDIKKNQLPGILGGVGPMHSLVQLV
QGLKDLVWLPIEQYRKDGRIVRGFQRGAASFGTSTAMAALELTNRMVQTIQAAAETAYDM
VSPGTLSIEPKKVRRFPHHRLAHQPVDLREGVAKAYSVVKEGITDTAQTIYETAAREHES
RGVTGAVGEVLRQIPPAVVKPLIVATEATSNVLGGMRNQIRPDVRQDESQKWRHGEDWHF
QRDSL
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggtcttccgacctagacctcgtctagcaactggttctgagcctatgtattggtcaagt
ttcatgaccagcagtatgcaactggcaaaagaatgtcttagccaaaaattaacagatgaa
caaggagaaggatcccagccttttgaagggcttgaaaaatttgctgaaaccatcgaaaca
gtactaagaagagtaaaagtcacttttatagacactgttttgagaattgaacatgtgcca
gaaaattccaaaactggaacagcccttgaaattcgaatagaaagaactgtatactgcgat
gaaactgctgatgaatcctcaggaattaatgtacatcagcccacagcttttgctcacaag
ttacttcagctctctggagtgtctctcttttgggatgagttttctgcatcagcaaaatct
tccccagtgtgttcgactgcaccagtggaaaatgagccaaagctgtcacctagctggaac
cccaaaattgtttatgagccacacccacaactaactagaaatttaccagagatagcgccc
tctgacccagtgcagattggtggattaattggtaggttggagttgagtctcacattgaaa
cagaatgaagtacttcctggagctaagttggattttgatggacagatagactctattcat
ctattcctgtcaccaagacaggtacacttgcttttggatatgttagcagctattgctgga
ccagaaaattctagcaaaatagggttagctaataaagataggaaaaaccgacctatgcag
caggaagacgagtatcgaattcagatggaattaaaccggtattatttgagaaaagattct
ctttctgtgggtgtatcttcagagcaaagcttttatgagacagaaacggctcgtacacct
tctagccgtgaagaagaagttttcttctccatggctgatatggacatgtcccatagtctc
tcttctcttccaccccttggggatcccccaaatatggacctggagttatcactaactagt
acatacactaataccccagccggatctccattaagtgctactgtgcttcagccaacatgg
ggagagttccttgatcatcataaagaacagccagtgagggggtcagcatttccatccaac
ctggttcaccagacatctttgcagaaggctgctctcccatctagatctgtttcaatggat
gaatccaggcctgagcttatttttagactagctgttggaactttttcagtctctgtgctt
cacattgatcctttatctccacctgaaacgtcattgagcctcaacccattgacacctatg
gctatagctttctttacttgtatagaaaagattgatccagcaagattttcatctgatgat
tttaagtctttccgaacagtatttgcagaagcttgctcacatgatcacctcagatttata
ggtactggcatcaaagtagcctatgaacaaagacaaagatcagcttcccggtattttagt
actgatacatccattggacaaatggagcttttggagtgtctatttccaaccgactgtcat
tctgttcctcctcactacacagagcttttaacatttcattctaaagaaggaactgatgcc
cacccccctgtgtgtcttcaacttcattataagcattctgagaatagaggaccccagggc
aatcaagcaagacttagttcagttcctcagaaggcggacttacaaattaaattaaatcca
gtatgttgtgaactggatataagtattgtggaccggttaaattccttgcttcaaccacag
aaacttactacagtagagatgatggcctctcacatgtatacttcatataataagcatatc
agtctgcacaaggctttcactgaagtatttctagatgattcacacaatcctgcaaattgt
cgagtatcagttcaagttgccactccagcattaaatctttctgttcgtttcccaatacct
gatcttcggtcagatcaagaaagaggaccatggtttaagaagtcacttcagaaggagatc
cttcatttagcattcacagatctagaatttaagacggagtttataggaggctcaacccca
gaacaaattaaattggaacttacctttagagaactagctgggtcattccaggaggagaaa
ggggagccatctgttaaatttttccatgtatctggtggagtagatggagatacagcatcg
tcagatgactttgactggccacgaatggtactgaaaataaacccaccagccatgcattcc
attttggagagaatagcagctgaagaggaggaagaaaatggtcactaccaggaagaggag
gaaggaggtgctcattctctgaaagatgtctgtgacctaaggagaccagccccatctcct
ttttcttctcgtagagtaatgtttgaaaatgaacagatggtgatgccaggagaccctgta
gaaatggtggagtttcaggataaagcaatcagcaattctcactatgtgttggaactaatg
ttaccgaatattcatgtaacattacctaataagagcttttatgagagactttataatagg
atctttaatgacttgctactgtgggagcccacagctccttcaccagtggagacatttgaa
aatatttcctatggtattgggctttcagtagccagtcaactgattaacaccttcaacaaa
gatagttttagtccatttaaatctacagttcactatgatgaagaaagtggatctgaagaa
gagactttgcagtatttttctactgttgatcccaactatcgttctcgtaggaaaaaaaaa
ttagactctcagaacaagaattctcagagttttctctcagttcttctgaatattaatcat
ggattaatggcagtgttcacagatgtaaagcaagataatggagacctactggaaaaccag
catggtgaattttggttagagttcaataatggatcattattttgtgtaacaaaatatgaa
ggttttgatgacaagcactacatttgccttcattctagcagtttcagtctgtaccacaaa
ggcgtagtagatggagcagttcttcctacagaaacacgacttccctgttcaacgcgccct
cattggttggagcctactatttactcttctgaagaagatggtctcagtagaactgcttca
gatggtgttggaggagacaatttgaatatgctctcggttgcagttaaaatattatctgat
aaatcagagtctaatacaaaggaatttctcattgctgtaggactaaaaggagccactctg
cagcacagaatgcttccttctgggcttagctggcatgagcagattttatacttcttgaat
attgctgatgaacctgttttggggtataatcctccaacttcatttacaacttttcatgtt
cacctttggagctgtgcacttgattacaggcccctttatttgccaatccgatctcttctt
acagttgaaacattcagcatttctagtagtgttgcactggataagtcgtcttctactctc
agaataatcatggatgaggctgctttacatctgtctgacaaatgtaacactgtcactgta
aatttgagtagagattatgttcgtgtgatggatatggggcttttagaattaaccataact
gcggtgaagtctgattctgacagagagcaaactgagccccgctttgagttgcactgttcg
agtgatgttgtccacatcagaacctgctcagactcctgtgctgctttgatgaatctcatt
cagtacattgcaagctatggtgacttacatgcacctggcaaggcagaacggaagcctgga
ggccctcagagaaagtccaaggtaggttcttctggtggatcatcctcacgcggtcctgtg
cttcctgaagcagatcagcaggttttacgggatctgatgagtgatgctatggaggaggtc
gacatgcagcagaccacttcatcaataaagccacaggctaatggtgttatggatgaaaaa
tctcaaattcaagaaccatgttgttcggaccttttcctgttcccagatgagagtggaaat
gtgtcccacgagcctggccccacttacgcctcattcactcaccacttgattagcgatgca
atgtcaggtgtgcccactgaaaacgatgatttttgcattctttttgcaccaaaagcagcc
atccaggagaaggaagaagagccagtcataaaaatcatggttgatgatgcaattgtgata
agagacaactattttagcctacctgttaagaagacagataccagcaaagccccattacac
tttcccattcctgtaattcggtatgttgttaaggaagtttctcttgtgtggcatctttat
ggaggcaaggattttgggacagttcctcctacttctccagctaaaagttacattagtcct
cacagttctccttctcacacacccacaagacacggacggaatacagtatgtggagggaaa
ggaagaaaccctgactttttaatggaaatacagttaagcaaggtgaaatttcagcatgaa
gtctaccccacatgcaaagcagaatgcgattctagcctcttagaacagccagtctctcgg
caggtgttcattgttcaggatcttgaaattcgggatcggctggcaacatcacaaatgaat
aaatttttgtacttgtattgcagcaaagaaatgcctcgcaaagctcattccaacatgttg
acaattaaagcattacatgtgcgcccagagtctggcaggtcaccacaggaatgctgcttg
agggtatcattgatgccacttcgcctcaatattgaccaggatgccttgttcttcctgaag
gatttcttcacaagtctttctgcagaagtggagcttctactgactccagatccagaagtc
aaaaagtctcctggagctgatgtcacctgcagtttgccaaggcatttgagtatttcaaag
gagccaaatctagttctttctttccctgggccaaaactttcccaaaacgagagtgccagt
gcagcggatgcagttaatggagcggaggaaaaggacttctcagccgaagaagcgtcattt
agtgatcagcctgtgttttttagagaattcagatttacatcagaagttcctattcgactt
gattatcatggcaaacatgtatcaatggatcagggtacgttagctgggattctaattggt
ttggcccagttaaactgctcagagctaaagctgaagaggcttttctatcggcatggtttg
ctaggtgttgataagttattttcatatgcaatcactgaatggctcaatgacattaagaag
aaccagctaccaggaatcctgggaggcgttggacctatgcattcactggttcagttagtg
caaggcctcaaggacttagtgtggctacccatagagcagtaccggaaggatgggcgcatt
gtccgagggttccagagaggcgccgcttcctttggcacttcaacggcaatggcagctctg
gagctgacaaacagaatggtccaaaccatacaggcagcagcagagactgcttatgacatg
gtgtctcctggtactctttctattgagcccaagaaggtcagaaggtttcctcatcaccga
ttagctcaccagccagtagacctgagggaaggtgtggccaaggcctacagtgtcgtcaaa
gagggaatcacagacacggctcagaccatttatgaaacagcagctcgagaacatgagagc
agaggggttaccggtgccgtgggtgaagtcctgcgccagattcccccagcagtggtgaaa
cctctgattgttgccactgaagcgacatcaaatgtgttgggtggcatgagaaaccaaatt
agaccagatgttcggcaagacgaatcacagaaatggcgccacggggaggactggcatttc
caacgagactccttgtga
DBGET
integrated database retrieval system
