Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968173
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Entry
101968173 CDS
T10664
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
Spliceosome [BR:
iti03041
]
Complex A
U1 snRNP components
U1 related factors
101968173 (Prpf40a)
Complex B
101968173 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101968173
NCBI-ProteinID:
XP_005315853
LinkDB
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Position
Unknown
AA seq
971 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSRGPGDGERRLSGSSLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANANSSTSTTNTVGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTNTS
AIQDLSVEVSSNTGEETSKQETITDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKE
KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKES
FQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQL
RKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRF
TNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISST
KRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAV
WEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRS
RSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSP
ESDAERDKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRR
RTLLEQLDDDQ
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagctgagcgtggaggcctcatggtgagtgaaatggagagccatcctccctcgcggggt
cccggggacggggagcggagattgtccggctcaagcctgtgctccagctcttgggtctct
gctgacggcttcctgaggagacggccttcgatggggcaccctggcatgcattatgcacca
atgggaatgcaccctatgggtcagagagccaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgcctcctatgggagggccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgccaggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgccaggagtaaatagtatggatgtagctgcaggcacagcatctggtgcaaaatcaatg
tggactgaacataaatcccctgatggaaggacttactactacaatactgaaacaaaacag
tctacatgggaaaagccagatgatcttaaaacaccagctgagcaattgttatctaaatgc
ccctggaaggaatacaaatctgattctggaaaaccttactattataattctcaaacaaaa
gaatcacgctgggctaaacctaaagaacttgaggatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaagaaagc
agcaagcaagaagagtgcaccacaacatcaacagccccagttcctacaacagaaattccc
accacaatgagcaccatggctgctgccgaagcagcagctgctgttgttgcagcggcagct
gcagctgcggcagctgctgctgcagccaatgccaattcttccacttctactactaatact
gtgggaactgttccagttgttcctgaacctgaagttacttccattgttgctactgttgta
gataatgaaaatacagtaactatatccactgaagaacaagcacaacttactaatacctct
gctattcaagatctgagtgttgaagtatccagtaatactggagaagaaacttctaagcaa
gaaactataactgattttactcccaaaaaagaggaggaggagagtcaaccagcaaaaaaa
acatatacttggaatacaaaagaagaagcaaagcaagcgtttaaagaattattgaaagaa
aagcgggtaccatccaatgcttcatgggagcaagctatgaaaatgatcattaatgatcct
cgatatagtgctttagcaaagttgagtgagaaaaagcaggcctttaatgcctataaagtc
cagacagagaaagaggaaaaagaagaagcaagatcaaaatataaagaggctaaggaatcc
ttccagcgttttcttgaaaatcatgagaaaatgacttccacaaccagatataaaaaggca
gaacaaatgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaa
atctatgaagatgttttgttctttctgtcgaaaaaagaaaaggaacaagcaaagcagttg
cgaaaaagaaattgggaagcattaaaaaacatacttgacaacatggctaatgtaacatat
tctacaacttggtctgaagcacagcagtatctaatggataatccaacttttgcagaagat
gaggagttacagaacatggacaaagaagatgcattaatttgctttgaagagcatattcga
gctctagaaaaggaagaagaagaagaaaaacagaagagtttgctaagagaaagaagacga
cagcgtaaaaatagggaatcttttcagatatttttagatgaattgcatgaacatggacag
cttcattctatgtcatcttggatggaattgtatccaactattagttctgatattcgattc
actaatatgcttggtcagcctggatcaactgcacttgatcttttcaagttttatgttgag
gatcttaaagcacgttatcatgatgaaaaaaagataataaaagacattctaaaggacaaa
ggatttgtagttgaagtaaatactacttttgaagactttgtggcaataatcagttcaact
aaaaggtcgactacattagatgctggaaatatcaagttggctttcaatagtttactagaa
aaggcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatgaaacgaaaa
gaatctgcattcaagagcatgctgaaacaagccactcctccaatagagttggatgctgtc
tgggaagatatccgggagagatttgtaaaagagccagcatttgaagacattactctagag
tctgaaaggaaaagaatatttaaagattttatgcatgtgcttgagcatgaatgtcaacat
catcattcaaagaacaagaaacattctaagaaatctaaaaaacatcataggaaacgttcc
cgctcccgatcggggtcagattcagatgatgatgacagtcattcaaagaaaaaacgacag
cgttcagagtcccgttctgcttcagaacattcttctagtgctgagtctgagagaagttat
aagaaatcaaaaaagcataagaagaaaagcaagaagaggagacataaatctgactctcca
gaatcagatgctgagcgagacaaggataaaaaagaaaaagatcgggaaagtgaaaaagat
agaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaaagat
tctggtaattgggatacttctggcagtgaactgagtgaaggtgaattagaaaagcgcaga
agaacccttttggagcaactggatgatgatcaataa
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