Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968497
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Entry
101968497 CDS
T10664
Symbol
Col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101968497 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101968497 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101968497 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101968497 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101968497 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101968497 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101968497 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101968497 (Col6a1)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101968497 (Col6a1)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101968497 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
101968497 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Creatininase
Motif
Other DBs
NCBI-GeneID:
101968497
NCBI-ProteinID:
XP_040143155
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MRLAQALLPLLLQAWWVAAQDIPETARAIAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDELKASVDAV
KYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRGAEEAISQTIDTIVDMIV
SGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGK
RGIDGVDGMKGETGYPGLPGCKGSPGFDGAQGPPGPKGDAGAFGLKGEKGAPGADGEAGR
PGNSGPPGDEGEPGEPGPPGEKGEAGDEGNTGPDGPPGERGGPGERGPRGTPGMRGPRGD
PGEAGPQGDQGREGPAGVPGDPGEPGPVGPKGYRGDEGPPGSEGLRGAPGPAGPPGDPGL
MGQRGEDGPPGNGTEGFPGFPGYPGSRGPPGLNGTKGYPGLKGDEGEAGDPGEDNNDIAP
RGVKGAKGHRGPEGPQGPPGSTGPPGPDECEILDIIMKMCSCCECKCGPIDILFVLDSSE
SIGLQNFEIAKDFIIKVIDRLSRDELVKFEPGQSHAGVVQYSHNQMQEHVDLRSPNIRNA
QEFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTQNDRIALVITDGRSDTQRDTTPLSVL
CGPDIQVVSVGIKDVFGFVASSDQLNVISCQGLSSPGRPGISLEKENYAELLDDAFLKNI
TAQICIDKKCPDYTCPVTFSAPADITILLDGSASVGSHNFDTTRHFAKRLAERFLSAGRA
DPSQDVRVAVVQYSGPGQQRPGRGALQFLQNYTVLASVVDGMDFFNDATDVNDALSYVTR
FYREASSGAAKKKVLLFSDGNSQGATAAAIEKAVQEAQRAGIEVFVVVVGHQVNEPHIRV
LVTGKTAEYDVAFGERHLFRVPSYQALLRGVFYQTVSRKVAQG
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggcccaggccctgctgcccctgctcctgcaggcctggtgggtggccgcccag
gacatccctgagaccgcgagggccattgccttccaagactgccccgtggacctgttcttt
gtgctggacacctctgagagtgtggccctgcggctgaagccctacggggccctggtggac
aaggtgaagtccttcaccaagcgcttcatcgacaacctgagagacaggtactaccggtgt
gaccgcaacctggtgtggaacgcgggcgccctgcactacagcgacgaggtggagatcatc
cgcgggctcacacgcatgcccagcgggcgcgatgagctcaaggccagcgtggacgctgtc
aagtacttcggcaagggcacctacactgactgcgccatcaagaaggggctggaggagctg
ctcatcgggggctcccacctgaaggagaacaagtacctgatcgtggtgaccgatgggcac
ccactggagggctacaaggagccgtgtgggggcctggaggacgccgtgaatgaggccaaa
cacctgggcatcaaggtcttctccgtggccatcacgcccgaccacctggagccgcgactg
agcatcatcgccaccgaccacacgtaccggcgcaacttcaccgcggcagactggggacag
agccgcggcgcggaggaggccatcagtcagaccattgacaccatcgtggacatgatagtg
agcgggtatgagggagaacgaggcaagccaggcctcccaggagagaagggagaagccgga
gaccctggaagacccggggacctcgggccagtcgggtaccaggggatgaagggagagaaa
gggagccgtggggagaagggctccaggggacccaagggctacaagggtgagaaaggcaag
cgaggcattgacggagtggacggaatgaagggggagacggggtacccaggccttccaggg
tgcaagggctcgccagggtttgatggcgcccaaggcccccccggccccaagggagacgcc
ggcgcctttggcctgaagggagagaagggtgcacctggagcggatggggaggctgggaga
cccggaaactcagggccaccgggagacgagggtgagcctggagagcctggtccccctgga
gagaaaggagaggctggtgacgaggggaacacaggaccggacggcccccccggagagagg
ggtggccctggagaaagaggacctcgggggaccccaggcatgcgggggccaagaggagac
ccaggtgaagctggaccccaaggagaccaagggagagaaggccccgcaggcgtccctgga
gacccgggtgagcctggccccgtcggacctaaaggataccgaggtgacgagggtccccca
gggtctgagggtctcagaggagccccaggacccgctggcccccctggagacccggggctg
atgggccaaaggggagaagacggcccccccggaaacggcaccgagggcttccccggcttc
cccggctacccaggcagcaggggcccccctgggctgaacggcaccaaaggctaccccggc
ctcaagggggacgagggtgaagctggggaccctggcgaggataacaacgacatcgcacct
cgcggcgtcaaaggggcaaaggggcaccgaggccccgagggcccgcagggacctccagga
agcacaggaccccccgggccagacgaatgtgagattttggacatcatcatgaagatgtgc
tcctgctgcgagtgcaagtgtggccccatcgacatcctcttcgtgctggacagctccgag
agcatcggcctgcagaactttgagatcgccaaggacttcatcatcaaggtcattgaccgg
ctgagcagggacgagctggtcaagtttgagcccgggcagtcgcacgctggcgtcgtgcag
tacagccacaaccagatgcaggagcacgtggacctgcgcagccccaacatccgcaatgcc
caggagttcaaggaagccgtcaagaagctgcagtggatggcgggcggcacctttacaggc
gaggccctgcagtacacccgggaccggctgctgccgcccacccagaatgaccgcatcgcc
ctggtcatcaccgatggacgctcggacacccagagggataccactccactcagcgtgctc
tgtggccccgacatccaggtggtctctgtgggcatcaaggacgtgtttggctttgtcgcg
agctctgaccagctcaacgtcatttcctgccaaggcctgtcgtccccgggccggccgggc
atctccctggagaaggaaaactatgcagagctgctggacgatgccttcctgaagaacatc
acggcccagatatgcatagacaagaagtgtccagactacacctgcccagtcaccttctcc
gccccggccgacatcaccatcctgctggacggctcggccagcgtgggcagccacaacttc
gacaccaccaggcacttcgccaagcgcctggcagagcgcttcctgtccgccggccgggcg
gacccctcacaggacgtgcgggtggcggtggtacagtatagcggccctggccagcagagg
cctgggcggggcgcactgcagtttctgcagaactacaccgtgctggccagcgtggtggac
ggcatggatttcttcaatgatgccaccgatgtcaacgatgccctgagctacgtcacacgc
ttctaccgtgaggcctcctcgggagccgccaagaagaaggtgctgctgttctcggacggc
aactcgcagggggccacggcggcggccatcgagaaggccgtgcaagaggcccagcgggcg
ggcatcgaggtctttgtggtggtggtgggtcaccaggtcaatgagccccacatccgcgtg
ctggtcactggcaagacggccgagtacgacgtggccttcggagagcgccacctgtttcgc
gtgcccagctaccaggccctgctgcgtggtgtcttctaccagacagtgtctaggaaggtg
gcgcagggctag
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integrated database retrieval system
