Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968499
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Entry
101968499 CDS
T10664
Symbol
Acan
Name
(RefSeq) aggrecan core protein isoform X3
KO
K06792
aggrecan 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
Proteoglycans [BR:
iti00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
101968499 (Acan)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
101968499 (Acan)
Lectins [BR:
iti04091
]
C-Type lectins
Lecticans
101968499 (Acan)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101968499
NCBI-ProteinID:
XP_005320181
LinkDB
All DBs
Position
Unknown
AA seq
2172 aa
AA seq
DB search
MTTFLLLFVTLRVITAAVSEEVSEHDNSLSVSIPQPSPVKVLLGTSLTIPCYFIDPMHPV
TTAPSTAPLAPRIKWSRVSKEKEVVLLVATEGHVRVNSAYQDKISLPNYPAIPSDATLEI
QNLRSNDSGIYRCEVIHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSA
IIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTPREGCYGDKDEFPGVRTYGIRDTNE
TYDVYCFAEEMEGEVFYATAPEKFTFQEAANECKRLGARLATTGQLYLAWQGGMDMCSAG
WLADRSVRYPISKARPNCGGNLLGVRTVYLHANQTGYPDPSSRYDAICYTGEDFVDIPEN
FFGVGGEEDITIRTVTWPDVELPLPQNITEGEARGNVILTVKPILNVSPTVLEPEEPFTF
VPDVGATAFPETENGTGEATRPWDFPEEATSGLGSVTAFTSEDLVVQVTVAPGEAEVPGQ
PRLPGGVVFHYRPGSTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLQD
QTVRYPIVSPRTPCVGDKDSSPGVRSYGVRPSSETYDVYCYVDKLEGEVFFATRLEQFTF
QEALEFCQSQNATLASTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGGDKPGVR
TVYLYPNQTGLPDPLSRHHAFCFQGASMVTSPGEEEVRTPTAPTDVEDWIITQVGPGVAA
VPIGEETTAVPDFTTEPENQTEWEPAYTPVGTSPLPEIPPTWPPTSAATEESTEGPSATA
VPSAPEEPFTSEETYTPAHVMPSGMELPGSGEVSGAPDTSGDFTGSGEASGRLDTSGQPS
GVSASGLPSGDLDSSSITSTVGSGLPVESGLSSGDEGKIEWPTTPKVSGLPSEGEGLEGS
ASGIGDLSRLPSGEEVLETSASGVGDLSGLPSGREGLETSASGVEDLSGLPTEKQSQETS
ASGVEDISGLPSGGEGLETSASGVEEGSGLPTESEGLETSTSGVEDLSGLHTGSEGLETS
ASGVEDLSGLPSGGEVLETSASGVEEVSVLPTEREGLETSASGVEEVSGLPTEGEGLETS
TSRVEDVSGIPTEKEGLETSASGVEDISGLPSGIGGLETSTSGVEDISGLSSGGEVLETS
ASGVGDVSRLPTGREGLDISASGTDDELSGGLPSGREGIEISGSGVGEDLSGLPSGREGL
ETSTSGTEETSEGLPSGTEDLVGSASGTLVFEKLPSGTVGSGQVPEESGLPSGFSGEYSG
VDFGSGPSSGLPDFSGLPSGFPTVSLVDTTLVEVVTASTASELEGRGTIGISGAGEISGL
PFSELDISGGESGLPSGIELSGQTSGSPDISGETSGLFDVSGQPSGFPDISGGTSGISEV
SGQPSGFPYTSGETSGVTELSGLSSGQPDVSGEASGVLFGSIPPFGITDQSGETSGVPDL
SGQPSGITPRIPDLVSGTMSGSGESSGITFVDTSLVEVTPTTFKEEEGLGSVELSGLPSG
ETDLSGTSGVVDVSGQSSGIIDSSGFTSPVPEFSGLPSGVTEVSGETSGAEMGSNLSSGG
YDSSGLPSGFPTVSLIDRTLVESVTQTPTAQEAGEGPSGILELSGTHSGTPDMSGDHSGS
LDLSGLQSGMVEPSGEPSSTPYFSGDFSSTTEISGESSAATSTSGEASGLPEVTLITSEF
VEGVTKPTVVSQELGQRSPVTYTPQLFEASGEASASGDMSGATPTFPSSGVEASSDPEAS
SELSAYPEAEVGTSAAPEANGEVSGASTLQETTSALHEADLKNASGLGVSSSPWAFQEGS
VEGSAAPEVTRESTITYDVGTEVSGMPSATPVTSGDRTEISGDLSGQTSGMDIVISTSLP
ESEWNQQTQRPAEAHLEIESSSPLFSREETQTAGTATSPTDASIPASPEGSGESESTVSD
IDECLSSPCLNGATCVDAIDSFTCLCLPSYGGDLCEIDQEVCEEGWTKFQGHCYRHFPDR
ETWVDAERRCREHQAHLSSIVTPEEQEFVNKNAQDYQWVGLNDRTIEGDFRWSDGHPLQF
EKWRPNQPDNFFATGEDCVVMIWHEKGEWNDVPCNYHLPFTCKKGTVACGDPPVVEHART
FGQKKDRYEINSLVRYQCTEGFVQRHVPTIRCQPSGHWEEPRITCTDPTTYKRRLQKRSS
RPPRKSHPSTAH
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atgaccacttttctcttgctttttgtgactctgagggtcatcactgcagccgtctcagaa
gaggtttcagagcatgacaactccctgagtgtgagcatcccccaaccgtccccagtgaag
gtcctcctggggacctccctgaccatcccctgctatttcattgaccccatgcatcctgtg
accaccgccccctccactgcccccctcgctccgagaatcaagtggagccgtgtttccaag
gagaaggaggtggtactgctggtggccactgaagggcacgtgcgggtcaacagtgcctat
caagacaagatctcgctgcccaattacccggccatccccagcgacgccaccttggagatc
cagaacctgcgctccaatgactccgggatctatcgttgcgaggtgatacacggcatcgag
gacagcgaggctaccctggaggttgtggtgaaaggcatcgtgttccactacagagccatc
tccacgcgctacaccctggactttgatagggcgcagcgggcctgcctgcagaacagcgcc
atcattgccacacctgagcagctgcaggctgcctatgaggacggcttccaccagtgtgac
gcaggctggctggccgaccagactgtgaggtaccccattcacaccccccgggaaggctgc
tatggagacaaggatgagtttccaggtgtaagaacctacggcatccgagacaccaatgag
acctatgatgtgtactgtttcgccgaggagatggagggcgaggtcttttatgcaaccgct
ccagagaagttcaccttccaggaggcagccaacgagtgcaagaggctgggcgcccggcta
gccaccaccggccagctctacctggcctggcagggtggcatggacatgtgcagcgccggc
tggctggccgaccgcagcgtgcgctaccccatctccaaggcccggcccaactgcgggggc
aacctcctgggtgtgaggaccgtctacctacatgccaatcagacgggctaccccgacccc
tcatcccgctacgacgccatctgctatacaggtgaagactttgtggacatcccagaaaat
ttcttcggggtaggtggtgaggaagacatcaccatccggacagtgacctggcccgatgtg
gagctgcccctgccccaaaacatcacggagggggaagcccgaggcaacgtgatcctcact
gtaaagcccatcctgaacgtatcccccactgtcctggagcctgaggagcccttcacattt
gtccctgatgtgggagccaccgccttccccgagacagagaatgggactggagaggccacc
aggccctgggactttcctgaggaggccacatctgggctgggctctgtcacggccttcacc
agcgaggatttggtggtgcaggtgactgttgcccctggtgaagccgaggtccctgggcag
ccccgtttgccagggggagtcgtgttccactaccgcccaggatccacccgatactctctg
acctttgaggaggcgcagcaggcctgtctacgcaccggggcggtcatagcttcacccgag
cagctccaggccgcctatgaggcgggctacgagcaatgtgatgctggctggctgcaggac
cagaccgtcagataccccattgtgagcccacggaccccatgtgtgggcgacaaggacagc
agccctggggtcaggagctacggtgtgcgcccatcatcagaaacctatgatgtctactgc
tacgtggacaagctcgagggggaggtattcttcgccacacgcctggagcagttcaccttc
caggaggccctggagttctgccagtcgcaaaacgccacactagcctccaccggccagctc
tatgccgcctggagccgaggcctggacaagtgctatgccggctggctggcggacggcagc
ctccgctaccccatcgtcacccctcggccagcctgcggcggggacaagccaggagtgaga
actgtctacctctatcccaaccagacgggccttccagacccactgtcccggcaccacgct
ttctgcttccaaggtgcatcaatggtgacctctccaggagaagaggaggtcagaactccc
acagcacccactgacgtggaggactggatcattacccaagtgggacctggtgtggctgct
gtccccataggagaggagacaactgcagtcccagacttcaccacagagccagaaaatcag
acagaatgggaaccagcctacaccccagtgggcacatccccactgccagaaatccctccc
acatggcctcccactagtgcagcaacagaggaaagcacagaaggcccttctgcaactgca
gtgccctctgccccggaagagcctttcacctcggaggagacctacacacctgcccatgtc
atgccaagtgggatggaactgccaggctctggggaagtatctggagcccctgacaccagc
ggtgacttcacaggcagtggagaagcttcaggacgccttgacaccagtgggcagccctca
ggggtcagtgcaagtggactgccctctggagaccttgattccagtagtatcacctccaca
gtgggctcaggcctgcctgtggaaagtggactgtcctcaggagatgaaggtaaaattgag
tggcctaccactcctaaggttagtgggctaccctctgaaggtgagggcttagagggctct
gcctctggaataggggacctcagcaggcttccttctggggaggaagttctagagacttct
gcctctggagtaggggatctcagtggacttccttcaggaagagaaggtctagagacttct
gcctctggagtcgaggacctcagtgggcttcctactgaaaaacaaagtcaagagacttct
gcctcaggagtagaagatatcagtgggcttccttcaggaggagaaggtctagagacttct
gcctctggagtagaggagggcagtgggcttcctactgaaagtgaaggcctagagacttct
acctctggagtagaggacctcagtgggcttcatactggaagtgaaggtctagagacttct
gcctctggagtagaggacctcagtgggcttccttctggaggagaagttctagagacttct
gcctctggagtagaggaggtcagtgtgcttcctactgaaagagaaggtctagaaacttct
gcctctggagtagaggaggtcagtgggcttcctactgaaggtgaaggcctagagacttct
acctctcgagtagaggacgtcagtgggattcctacagaaaaagaaggtctagagacctct
gcctctggagtggaggacatcagtgggcttccttctggaataggaggtctagagacttct
acctctggagtagaggacatcagtgggctttcttctggaggagaagttctagagacttct
gcctctggagtaggggatgtcagcaggcttcctactggaagagaaggtctagacatttct
gcctctggcacagatgatgaacttagtggtggacttccttctggaagagaaggtatagag
atttctggttctggagtaggagaagatctcagtggacttccttctggaagggaaggtcta
gagacctcaacttcgggaactgaagaaacctcagaaggattaccttctggaacagaagat
ttggtagggtctgcttctggaaccttggtctttgaaaagctgccttctggaactgtagga
agtggacaagttccagaagaaagtggccttccctctggatttagtggtgagtattctgga
gtggactttggaagtggcccatcctctggcctgcctgactttagtggacttccatctgga
tttccaactgtttctctagtggatactacattggtagaagtggtcacagcctccactgca
agtgaactggaagggaggggaaccattggcatcagtggtgcaggagaaatatctgggctg
cccttcagtgaactggacattagcgggggagaaagtggactcccttcaggaattgaactc
agtggtcaaacatctggatctcctgacatcagtggagaaacatctggattatttgatgtt
agtggacagccatctgggtttcctgacatcagtgggggaacatctggcatttccgaggtc
agtgggcagccatcagggtttccttacacaagtggggaaacatctggagtgactgagctt
agcggactatcttctggacaaccagatgtcagtggagaagcatctggagttctttttggc
agcatcccaccattcggtataactgaccagagtggagaaacatctggggttcctgatctc
agtgggcagccatcaggaataacacccagaatcccggacctggtttctggcaccatgagt
ggcagtggggaatcttctggaattacatttgtggacacgagtttggttgaagtgacccct
actacatttaaagaagaagaaggcttagggtcagtggaactcagtggtctcccttctggg
gagacagatctgtcaggcacatctggggtagtggatgtcagtggacaatcttctggaata
atcgattccagtgggtttacatccccagttccagaattcagtggcctaccaagtggagtg
actgaggtcagtggagaaacttctggagctgagatggggagcaacctgtcttcaggagga
tatgacagcagtggacttccatcaggtttcccaactgtctctctcatagacagaactttg
gtggaatctgtaacccagactccaacagcccaagaagctggagaaggaccttcaggcatt
ttggaactcagtggtacccattctggaacaccagacatgtctggagaccattctggatct
ttggacctaagtggactgcaatctgggatggtggaacccagcggagagccatcaagcact
ccatatttcagtggggacttttcaagcaccactgaaataagcggagaatcctctgcagcc
acaagcacgagtggagaggcctcgggtcttccagaagttactttaatcacttctgagttc
gtggagggtgtaaccaaaccaactgttgtttcccaggaacttggccaaagatcccctgtg
acatatacaccccagctttttgaggccagtggggaagcctctgcctctggggacatgagt
ggggctacaccaacgttccccagttctggagtagaagcatcatcagacccagaagccagc
agtgaattgtctgcctatcctgaggctgaagtgggaacatctgctgccccagaggccaac
ggagaggtgtctggggcctctactctgcaggaaaccacctctgccttgcacgaagctgac
ctcaagaacgcctcgggcctgggggtgagcagcagcccttgggcttttcaggaaggttcc
gtggaggggtctgctgctcccgaagtgaccagagagtcaaccatcacctatgatgtgggc
acagaggtatccggcatgccttcagccactcctgtgacctctggggacaggactgaaatc
agtggagacctgtctggtcagacctcagggatggatattgtcatcagcaccagcctccca
gaatctgaatggaaccagcagacccagcgccctgcagaggcacatctagaaatcgagtcc
tcaagtcccttgttctcaagagaagagacccaaacggctggaacagccacctccccaaca
gatgcttccatcccagcttccccagagggatcgggagaatcagagtccaccgtttcagac
attgatgagtgcctctcaagcccttgtctgaatggagccacctgcgtggatgccatcgac
tctttcacatgcttatgccttcccagctacggaggggacctgtgtgagatcgaccaggag
gtatgcgaggagggctggaccaagttccagggacactgctaccgccacttccctgaccgt
gagacctgggtggatgctgagagacggtgtcgagagcatcaagcgcacctgagcagcatc
gtcacccctgaggagcaggagtttgtcaacaaaaacgctcaagactaccagtgggtcggc
ttgaatgacaggaccatcgaaggggacttccgctggtcagatggacaccccttgcaattt
gagaaatggcgccccaaccagcctgacaacttctttgccactggagaggactgcgtggtg
atgatttggcatgagaagggcgagtggaatgatgttccctgcaattaccacctgcccttc
acgtgtaaaaagggcacagtggcctgcggagacccccctgtggtggaacatgccaggacc
tttggacagaagaaggaccgatatgaaatcaattccctggttcggtaccagtgcactgag
ggctttgtccagcgccatgtgcccactatccggtgccaacccagcgggcactgggaggag
cctcggatcacctgcacggaccccaccacctacaagcgcagactacagaaacggagttca
cggcccccaaggaagagccaccccagcacggcccactga
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integrated database retrieval system
