KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968687
Entry
101968687         CDS       T10664                                 
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:iti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    101968687 (Polr1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:iti03021]
    101968687 (Polr1a)
Enzymes [BR:iti01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     101968687 (Polr1a)
Transcription machinery [BR:iti03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     101968687 (Polr1a)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 101968687
NCBI-ProteinID: XP_005338501
LinkDB
Position
Unknown
AA seq 1708 aa
MSGSRHTPWRRLQGVSFGMYSAEELRKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLL
VCQLRVLEVGALQAVYELERILSRFMEENADPSAFEIQEELEQYTTKVLQNNLLGTQGAH
VKNVCESRSKLIAYFWKAHMSAKRCPHCKTGRSVVRKEHNSKLTITYPAVVHRKSGQTDA
EPLGIEEAQMGKRGYLTPSSAREHLFSIWKNEGFFLNYLFSGLVDVGMESRFNPSMFFLD
FVVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQQLPCEVAALST
DEEKDTLMAMDRSFLSTLPGQTLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDITQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARVLPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEARVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFFTREQYVELLYRG
LTDKAGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPKDYIPLNLSGKAKISGKAWVKET
PRPVPGFNPDSMCESQVLIRDGELLCGVLDKAHYGSSAYGLVHCCHEVYGGETSGRVLTC
LARLFTAYLQLYRGFTLGVEDILVRPKADVKRRRIIEESTHCGPQAVRAALNLPEAASCD
EVQGKWQDAHLGKDQRDFNMIDLKFKEEVNRYSNEINKACMPLGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYRFTPRAGGFVTGRFLTGIQ
PSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMRSKHLHEVLSRADPKKALRHFRAIKKWHSRHS
SGLLRRGAFLSYSQKVQDAVRALNLKGENRNGRSPEAQQVLQMWYELDEKSQQKYQRKAA
PCPDPSLSVWRPDIYLASVSEHFEKKIDDYSQEWALETEKSYKKSELSLDRLRTLLHLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALRKVRSLKKQLTRVCLEEVLQKVDVQESFCMGEKQNKFRVYQLRFQ
FLPHEYYKQEKCLRPEDILHFMETRFFRLLMESVRKKHSKDSSFRSVNTRRATQQDLEGT
GESETRRGEQEGEEEEEGDIVNADAEEGDADASDAKRKQKQEEEVDYESEEEEEKEGEEE
DAQEEGDAGEGGPQAGEPDEATGSGPNEDAPPSPPFCPGPQGAEAMERRVQAVREAHSMI
EDYQYDTAESLWCQVTMKLPLVKANFDMGSLLASLARSTVVYSTRGITRCLLSETTSSRN
GKELMLSTEGINLPELFKYAEVLDLRRLYSNDIHAMASAYGIEAALRVIEKEIKDVFAVY
GIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFQFLKQATMMGSHDE
LRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq 5127 nt   +upstreamnt  +downstreamnt
atgtcgggctccaggcacacgccctggcggcggctgcagggcgtttctttcgggatgtat
tcggccgaggagctcaggaaattaagcgttaagtccatcacaaaccctcggtacctggac
agcttggggaacccatcagcaaacggcctgtatgacttagctttgggccctgcggattcc
aaagaggtgtgctccacctgtgtgcaagatttcaacaactgctccggacacctaggccac
atcgaactgccactcacagtgtacaacccgctcctctttgataaactctacctgctcctc
cgaggctcctgtttaaactgccacatgctgacttgtccccgggctgtggttcacctcttg
gtctgccagctgagagttctggaagttggggccctacaagcagtctatgagctggagcga
attctgagcaggtttatggaagaaaatgctgatccttctgcctttgaaattcaggaagag
ttagaacagtacacaaccaaggttctgcagaacaacctcctggggactcagggcgcacac
gtgaaaaatgtgtgtgagagcagaagcaaactcattgcttacttctggaaggcacacatg
tctgctaagcgatgtccccactgcaagactgggcggtcagttgttcgaaaggagcacaac
agcaagctgacaatcacgtatccagctgtggtgcacaggaagtctggccagacggatgct
gagcccctgggaattgaggaagctcagatgggaaaacgagggtacttgacacccagcagt
gcccgggaacatcttttctccatttggaagaatgaaggattctttctgaattaccttttc
tcgggactggttgatgttggcatggaatccagattcaatccgagtatgttctttctagat
ttcgtggtcgtgcctccctccaggtatcgccctgtcaatcgcttgggggaccagatgttt
accaatggccagacggtgaacttgcaggctgtcatgaaggatgtagttctgatccgaaaa
cttctagcactgatggcacaagaacagcagctgccctgtgaggtggcagcgctcagcaca
gacgaggaaaaagacactttgatggctatggaccggtcctttttaagtacacttccaggc
cagactctcacagacaagctgtacaacatttggattcgccttcagagccacgtcaacatt
gtgtttgacagcgagatggacaaactcatgatggaaaagtaccctggcatcagacagatc
ttggagaagaaagaaggcctgttccgaaagcacatgatgggcaagcgggtagattacgcg
gcccgctctgtcatctgcccagacatgtacatcaacaccaacgagatcgggattcccatg
gtgtttgccacaaaactgacctaccctcagccagtgaccccctggaatgtccaggaactg
aggcaggcagtcatcaatggtcccaatgtgcacccaggagcctccatggtcatcaatgag
gatggcagtcgcacagccctgagcgctgtggacataacccagcgtgaagccgtggccaaa
cagctcctgacaccagccacaggggcacctaagccccaggggacaaaaattgtgtgccgg
cacgtgaagaatggggacatcctcttgctaaaccgacagcccaccctgcataggccctcc
atccaggcccaccacgcccgtgtcctgccgggggagaaggtcctgaggctgcactacgcc
aactgcaaggcctacaacgctgacttcgatggcgacgagatgaacgcccacttcccccag
agcgagctgggccgggccgaggcccgcgtgctggcctgcactgaccagcagtacctcgtt
cccaaggatggacagccattggcagggctgatccaggatcacatggtttcaggtgcaaac
atgaccactcgaggttgctttttcacccgggaacagtacgtggagttgctgtaccgagga
ctcacagacaaagcggggcgcgtgaagcttcttcctcctgccatcctgaagccctttcca
ctgtggaccgggaagcaggtcgtgtcaacactgctcataaacataatccccaaggactac
atcccactgaacttgtccggaaaggcaaaaatcagcggaaaagcctgggtgaaggagact
cctcggcctgttcctggctttaaccctgactccatgtgcgagtcccaggtgctaatccgc
gacggggagctgctctgcggagtgctggacaaggcgcactatgggagctccgcctatggc
ctggtgcactgctgccacgaggtctacgggggtgagaccagcggcagggtcctcacctgc
ctggcccggctattcaccgcctacctgcagctctaccgaggcttcaccctgggtgtggaa
gacattttggttaggccaaaggcggatgtgaagagacgtaggattattgaggaatccacc
cactgtgggccccaggctgtccgggctgcactaaacctgccagaagccgcgtcatgtgat
gaggtccaagggaagtggcaggatgcccatctgggcaaggaccagagggattttaacatg
atcgatctgaagttcaaggaggaagtcaaccgctacagcaatgagattaacaaggcgtgt
atgcctcttggcctgcacaggcagttcccagagaacaacctgcagatgatggtgcagtcg
ggggccaaagggtcaaccgtgaacacaatgcagatctcatgcctgctgggacagatcgag
ctagaggggcggaggcccccactgatggcgtccggcaagtcgctgccctgcttcgagccc
tacaggttcacccccagggctggcggcttcgtcactgggaggttcctcaccggcattcag
ccttccgagttcttcttccactgcatggcggggcgtgagggcctggtggacacagcagtc
aagacaagccgctccggctatctgcagaggtgcatcatcaaacacttggaggggctggta
gtccagtacgatctgacggtccgggacagcgatggcagcgtggtgcagttcctgtatggg
gaggacggtctggacatccccaagacacagttcctgcagcctaagcagttccccttcctg
gccagcaactacgaggtgataatgagatccaagcacctccatgaagtcttatccagagca
gatcccaaaaaggccctccgccacttcagagctatcaaaaaatggcacagcaggcattcc
agcgggctgctgaggaggggagccttcctgagctattcccagaaggtccaggacgctgtg
agggcgctgaacctgaaaggcgagaacaggaatggtcgcagcccagaggcccagcaggtg
ttgcagatgtggtacgagttagatgagaagagccagcagaagtaccagaggaaggcggcc
ccttgtcctgaccccagtctgtctgtctggcgcccagatatctacttggcgtctgtgtca
gaacattttgaaaaaaagattgatgactacagtcaagaatgggcacttgaaacagaaaag
agttacaagaaatcagagctttctctggacaggttgaggaccctgctgcatctcaaatgg
cagcgctcgctctgcgacccgggtgaggctgtgggcctgctggccgcccagagcatcggg
gagccgtccacgcagatgaccctgaacaccttccactttgcaggcagaggcgagatgaac
gtcaccctgggtatcccaaggttgagggagattctcatggtggccagcgccaacatcaag
acacccatgatgagtgtgcccgtgttcaacaccaagaaagccctaaggaaagtgaggagc
ctgaagaagcagctcaccagggtgtgcttagaggaggtgttgcagaaagttgacgtccag
gagtccttctgtatgggagaaaaacagaacaaattccgggtgtaccagctgcggttccag
ttcctgccacatgagtactacaagcaggagaagtgcctgaggcctgaggacatcctgcac
ttcatggaaacgaggttcttcaggctcctgatggagtccgtcagaaagaagcacagtaag
gactccagcttcagaagcgtgaacactcggagagccacacagcaggacctggaaggcaca
ggggagtcggagactaggcggggtgagcaggaaggggaggaagaggaggaaggggacatc
gtgaacgctgatgccgaggagggggatgctgacgcctccgatgccaagcgcaagcagaag
caggaggaggaggtggattacgagagcgaggaggaggaggagaaggaaggggaggaggaa
gacgcacaggaggaaggggacgccggtgaaggtggcccccaggccggtgagccagatgag
gccacaggctcaggccccaatgaggacgcacccccgagccctcccttctgcccagggccc
cagggagccgaggccatggagcgacgagtgcaggctgtgcgggaggcccactctatgata
gaggactaccagtatgacaccgcggagagcctgtggtgccaggtgaccatgaagctgcct
ctggtgaaggccaactttgacatgggctcgctgcttgcatccctggcccgcagcaccgtg
gtctactccaccaggggcatcaccaggtgcctcctgagtgaaacgacctccagtaggaac
gggaaggagctcatgctgagcacggaggggatcaacctcccagagcttttcaagtatgct
gaggtgctggacctgcgccgcctctactccaacgacatccacgccatggccagcgcgtat
ggcatcgaggctgccctgcgggtgattgagaaggagatcaaggacgtatttgccgtgtat
ggcattgccgtcgatcctcgccatctctccctggttgctgattacatgtgcttcgagggg
gtctacaagcccctgaatcgctttggcatccagtcgaactcctctcctctccagcagatg
acatttgagaccagtttccagtttctgaagcaggccaccatgatggggtcccatgacgag
ctgaggtccccttcagcctgcctcgtggtcgggaaggtcgtcaagggtggaacaggcctg
tttgagctcaagcagcccctgaggtag

DBGET integrated database retrieval system