Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101968687
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Entry
101968687 CDS
T10664
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101968687 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iti03021
]
101968687 (Polr1a)
Enzymes [BR:
iti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101968687 (Polr1a)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101968687 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
101968687
NCBI-ProteinID:
XP_005338501
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MSGSRHTPWRRLQGVSFGMYSAEELRKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVVHLL
VCQLRVLEVGALQAVYELERILSRFMEENADPSAFEIQEELEQYTTKVLQNNLLGTQGAH
VKNVCESRSKLIAYFWKAHMSAKRCPHCKTGRSVVRKEHNSKLTITYPAVVHRKSGQTDA
EPLGIEEAQMGKRGYLTPSSAREHLFSIWKNEGFFLNYLFSGLVDVGMESRFNPSMFFLD
FVVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQQLPCEVAALST
DEEKDTLMAMDRSFLSTLPGQTLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDITQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARVLPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEARVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFFTREQYVELLYRG
LTDKAGRVKLLPPAILKPFPLWTGKQVVSTLLINIIPKDYIPLNLSGKAKISGKAWVKET
PRPVPGFNPDSMCESQVLIRDGELLCGVLDKAHYGSSAYGLVHCCHEVYGGETSGRVLTC
LARLFTAYLQLYRGFTLGVEDILVRPKADVKRRRIIEESTHCGPQAVRAALNLPEAASCD
EVQGKWQDAHLGKDQRDFNMIDLKFKEEVNRYSNEINKACMPLGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYRFTPRAGGFVTGRFLTGIQ
PSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMRSKHLHEVLSRADPKKALRHFRAIKKWHSRHS
SGLLRRGAFLSYSQKVQDAVRALNLKGENRNGRSPEAQQVLQMWYELDEKSQQKYQRKAA
PCPDPSLSVWRPDIYLASVSEHFEKKIDDYSQEWALETEKSYKKSELSLDRLRTLLHLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALRKVRSLKKQLTRVCLEEVLQKVDVQESFCMGEKQNKFRVYQLRFQ
FLPHEYYKQEKCLRPEDILHFMETRFFRLLMESVRKKHSKDSSFRSVNTRRATQQDLEGT
GESETRRGEQEGEEEEEGDIVNADAEEGDADASDAKRKQKQEEEVDYESEEEEEKEGEEE
DAQEEGDAGEGGPQAGEPDEATGSGPNEDAPPSPPFCPGPQGAEAMERRVQAVREAHSMI
EDYQYDTAESLWCQVTMKLPLVKANFDMGSLLASLARSTVVYSTRGITRCLLSETTSSRN
GKELMLSTEGINLPELFKYAEVLDLRRLYSNDIHAMASAYGIEAALRVIEKEIKDVFAVY
GIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFQFLKQATMMGSHDE
LRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggctccaggcacacgccctggcggcggctgcagggcgtttctttcgggatgtat
tcggccgaggagctcaggaaattaagcgttaagtccatcacaaaccctcggtacctggac
agcttggggaacccatcagcaaacggcctgtatgacttagctttgggccctgcggattcc
aaagaggtgtgctccacctgtgtgcaagatttcaacaactgctccggacacctaggccac
atcgaactgccactcacagtgtacaacccgctcctctttgataaactctacctgctcctc
cgaggctcctgtttaaactgccacatgctgacttgtccccgggctgtggttcacctcttg
gtctgccagctgagagttctggaagttggggccctacaagcagtctatgagctggagcga
attctgagcaggtttatggaagaaaatgctgatccttctgcctttgaaattcaggaagag
ttagaacagtacacaaccaaggttctgcagaacaacctcctggggactcagggcgcacac
gtgaaaaatgtgtgtgagagcagaagcaaactcattgcttacttctggaaggcacacatg
tctgctaagcgatgtccccactgcaagactgggcggtcagttgttcgaaaggagcacaac
agcaagctgacaatcacgtatccagctgtggtgcacaggaagtctggccagacggatgct
gagcccctgggaattgaggaagctcagatgggaaaacgagggtacttgacacccagcagt
gcccgggaacatcttttctccatttggaagaatgaaggattctttctgaattaccttttc
tcgggactggttgatgttggcatggaatccagattcaatccgagtatgttctttctagat
ttcgtggtcgtgcctccctccaggtatcgccctgtcaatcgcttgggggaccagatgttt
accaatggccagacggtgaacttgcaggctgtcatgaaggatgtagttctgatccgaaaa
cttctagcactgatggcacaagaacagcagctgccctgtgaggtggcagcgctcagcaca
gacgaggaaaaagacactttgatggctatggaccggtcctttttaagtacacttccaggc
cagactctcacagacaagctgtacaacatttggattcgccttcagagccacgtcaacatt
gtgtttgacagcgagatggacaaactcatgatggaaaagtaccctggcatcagacagatc
ttggagaagaaagaaggcctgttccgaaagcacatgatgggcaagcgggtagattacgcg
gcccgctctgtcatctgcccagacatgtacatcaacaccaacgagatcgggattcccatg
gtgtttgccacaaaactgacctaccctcagccagtgaccccctggaatgtccaggaactg
aggcaggcagtcatcaatggtcccaatgtgcacccaggagcctccatggtcatcaatgag
gatggcagtcgcacagccctgagcgctgtggacataacccagcgtgaagccgtggccaaa
cagctcctgacaccagccacaggggcacctaagccccaggggacaaaaattgtgtgccgg
cacgtgaagaatggggacatcctcttgctaaaccgacagcccaccctgcataggccctcc
atccaggcccaccacgcccgtgtcctgccgggggagaaggtcctgaggctgcactacgcc
aactgcaaggcctacaacgctgacttcgatggcgacgagatgaacgcccacttcccccag
agcgagctgggccgggccgaggcccgcgtgctggcctgcactgaccagcagtacctcgtt
cccaaggatggacagccattggcagggctgatccaggatcacatggtttcaggtgcaaac
atgaccactcgaggttgctttttcacccgggaacagtacgtggagttgctgtaccgagga
ctcacagacaaagcggggcgcgtgaagcttcttcctcctgccatcctgaagccctttcca
ctgtggaccgggaagcaggtcgtgtcaacactgctcataaacataatccccaaggactac
atcccactgaacttgtccggaaaggcaaaaatcagcggaaaagcctgggtgaaggagact
cctcggcctgttcctggctttaaccctgactccatgtgcgagtcccaggtgctaatccgc
gacggggagctgctctgcggagtgctggacaaggcgcactatgggagctccgcctatggc
ctggtgcactgctgccacgaggtctacgggggtgagaccagcggcagggtcctcacctgc
ctggcccggctattcaccgcctacctgcagctctaccgaggcttcaccctgggtgtggaa
gacattttggttaggccaaaggcggatgtgaagagacgtaggattattgaggaatccacc
cactgtgggccccaggctgtccgggctgcactaaacctgccagaagccgcgtcatgtgat
gaggtccaagggaagtggcaggatgcccatctgggcaaggaccagagggattttaacatg
atcgatctgaagttcaaggaggaagtcaaccgctacagcaatgagattaacaaggcgtgt
atgcctcttggcctgcacaggcagttcccagagaacaacctgcagatgatggtgcagtcg
ggggccaaagggtcaaccgtgaacacaatgcagatctcatgcctgctgggacagatcgag
ctagaggggcggaggcccccactgatggcgtccggcaagtcgctgccctgcttcgagccc
tacaggttcacccccagggctggcggcttcgtcactgggaggttcctcaccggcattcag
ccttccgagttcttcttccactgcatggcggggcgtgagggcctggtggacacagcagtc
aagacaagccgctccggctatctgcagaggtgcatcatcaaacacttggaggggctggta
gtccagtacgatctgacggtccgggacagcgatggcagcgtggtgcagttcctgtatggg
gaggacggtctggacatccccaagacacagttcctgcagcctaagcagttccccttcctg
gccagcaactacgaggtgataatgagatccaagcacctccatgaagtcttatccagagca
gatcccaaaaaggccctccgccacttcagagctatcaaaaaatggcacagcaggcattcc
agcgggctgctgaggaggggagccttcctgagctattcccagaaggtccaggacgctgtg
agggcgctgaacctgaaaggcgagaacaggaatggtcgcagcccagaggcccagcaggtg
ttgcagatgtggtacgagttagatgagaagagccagcagaagtaccagaggaaggcggcc
ccttgtcctgaccccagtctgtctgtctggcgcccagatatctacttggcgtctgtgtca
gaacattttgaaaaaaagattgatgactacagtcaagaatgggcacttgaaacagaaaag
agttacaagaaatcagagctttctctggacaggttgaggaccctgctgcatctcaaatgg
cagcgctcgctctgcgacccgggtgaggctgtgggcctgctggccgcccagagcatcggg
gagccgtccacgcagatgaccctgaacaccttccactttgcaggcagaggcgagatgaac
gtcaccctgggtatcccaaggttgagggagattctcatggtggccagcgccaacatcaag
acacccatgatgagtgtgcccgtgttcaacaccaagaaagccctaaggaaagtgaggagc
ctgaagaagcagctcaccagggtgtgcttagaggaggtgttgcagaaagttgacgtccag
gagtccttctgtatgggagaaaaacagaacaaattccgggtgtaccagctgcggttccag
ttcctgccacatgagtactacaagcaggagaagtgcctgaggcctgaggacatcctgcac
ttcatggaaacgaggttcttcaggctcctgatggagtccgtcagaaagaagcacagtaag
gactccagcttcagaagcgtgaacactcggagagccacacagcaggacctggaaggcaca
ggggagtcggagactaggcggggtgagcaggaaggggaggaagaggaggaaggggacatc
gtgaacgctgatgccgaggagggggatgctgacgcctccgatgccaagcgcaagcagaag
caggaggaggaggtggattacgagagcgaggaggaggaggagaaggaaggggaggaggaa
gacgcacaggaggaaggggacgccggtgaaggtggcccccaggccggtgagccagatgag
gccacaggctcaggccccaatgaggacgcacccccgagccctcccttctgcccagggccc
cagggagccgaggccatggagcgacgagtgcaggctgtgcgggaggcccactctatgata
gaggactaccagtatgacaccgcggagagcctgtggtgccaggtgaccatgaagctgcct
ctggtgaaggccaactttgacatgggctcgctgcttgcatccctggcccgcagcaccgtg
gtctactccaccaggggcatcaccaggtgcctcctgagtgaaacgacctccagtaggaac
gggaaggagctcatgctgagcacggaggggatcaacctcccagagcttttcaagtatgct
gaggtgctggacctgcgccgcctctactccaacgacatccacgccatggccagcgcgtat
ggcatcgaggctgccctgcgggtgattgagaaggagatcaaggacgtatttgccgtgtat
ggcattgccgtcgatcctcgccatctctccctggttgctgattacatgtgcttcgagggg
gtctacaagcccctgaatcgctttggcatccagtcgaactcctctcctctccagcagatg
acatttgagaccagtttccagtttctgaagcaggccaccatgatggggtcccatgacgag
ctgaggtccccttcagcctgcctcgtggtcgggaaggtcgtcaagggtggaacaggcctg
tttgagctcaagcagcccctgaggtag
DBGET
integrated database retrieval system