Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101969141
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Entry
101969141 CDS
T10664
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03030
DNA replication
iti03410
Base excision repair
iti03420
Nucleotide excision repair
iti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101969141 (Lig1)
03410 Base excision repair
101969141 (Lig1)
03420 Nucleotide excision repair
101969141 (Lig1)
03430 Mismatch repair
101969141 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iti03032
]
101969141 (Lig1)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101969141 (Lig1)
Enzymes [BR:
iti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101969141 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
101969141 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101969141 (Lig1)
DNA replication proteins [BR:
iti03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101969141 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101969141 (Lig1)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101969141 (Lig1)
NER (nucleotide excision repair)
Other NER factors
101969141 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
101969141 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
101969141
NCBI-ProteinID:
XP_013218959
LinkDB
All DBs
Position
Unknown
AA seq
927 aa
AA seq
DB search
MQRSIRSFFYPTKEGKAKKPEKETTNSSRETEPPPKVALKERNGVLPESDSPVKRPGRKV
ARVLSSEGEEEDEALTPPCGQKPVQDSPQGSPPSPALSSGNSPSVSNTSLADTSPSGIPK
RLTARKQLPKRSMQDVLEEQSEDMEREAKRRKAEEGEVPGEADTPRESPTEAEVVKTKEE
AEGEHPSTPPDPPKPPKAETPAKTEGTAAPEAPKAVSRQEPQEEDQSKPPPRAPRTLSSF
FTPRKPAVKIEVKEEESSAPGKDEAKGPLDPTSYNPAKNNYHPIEDACWKPGQKVPYLAV
ARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGIGDS
VLLKAVAQATGRQLETVRAEVAEKGDVGLVAESSRSTQRLMLPPPPLTTSGVFTKFRDIA
RLAGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPP
GQEYPPAVVDAGKGRTAEARKTWLEEQCLILKQTFCEVPDLDRIVPVLLEHGLEHLPEYC
RLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHLLEGGEVKIFSRNQE
DNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDPSEIQ
VQVCLYAFDLIYLNGESLVREPLSRRRQLLREHFVETEGEFVFATSLDTKDVEQIAEFLE
QSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRA
GRYGGFLLAAYDEDSEELQAICKLGTGFSGEELEEQHQSLQALVLPTPRPYVRADGAVAP
DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKQPEEATTSAQ
VASLYLKQSQIQNQHDTDSDSNPEDFY
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcaggtcatttttctaccccacaaaagagggtaaagcaaagaaacct
gagaaagagacaaccaacagcagcagagagacggagcctcctccaaaagtggcactgaag
gagcggaatggagtgctgcccgagagtgactcaccagtgaagaggccagggaggaaggtg
gcccgggtcctgagcagtgagggagaggaggaggatgaagccctcaccccaccttgtggc
cagaagcctgtgcaagactccccccaaggctctcctcccagtcctgccctgtcttctggg
aatagcccctccgtctccaacacctcccttgcagacacctccccatcggggatcccaaag
cgtctcacagctcggaagcagctcccgaaacggtcaatgcaagatgtcctggaagagcag
agtgaagacatggaaagagaagccaagaggagaaaggcagaggaaggtgaggtcccagga
gaagcagacaccccaagagaaagtcccacagaggctgaagtggtaaagacaaaggaagaa
gctgaaggcgagcaccccagcacaccccctgaccctccaaagccccctaaagcagagact
ccagcaaagacagaaggcacagcggcacctgaggcacccaaggcagtcagccggcaggaa
ccacaggaagaggaccagagcaagcctcctcccagagcccccaggacgctcagcagtttc
ttcaccccccggaagccggcggtcaaaatagaagtgaaagaagaggagtcaagtgctccg
ggaaaggacgaggccaagggacctctggatccgactagctacaatcctgccaagaacaac
taccaccccattgaggacgcctgctggaaaccaggccagaaggtcccttatctggctgtg
gcccgcacattcgagaagattgaggaggtttctgctcggctccggatggtggagacgctg
agcaacttgctacgctccgtagtggccctgtcacctccagacctcctacctgtcctctat
ctcagtctcaaccgccttgggccaccccagcagggcctggagcttggcattggtgacagc
gtcctccttaaagcagtggcccaggccacaggtcggcagctggagactgtgcgggctgag
gtggctgagaagggcgatgtggggcttgtggctgagagcagccgcagcacccagaggctc
atgctgccaccaccaccccttaccacctccggggtcttcaccaagttccgtgacatcgcc
cggctggctggcagtgcttccatggccaagaagatggacatcatcaaaggcctctttgtg
gcctgccgccactcggaagcccggttcatcgccaggtccctgagtggacggttgcgcctt
ggactcgcagagcagtcagtgctggccgcccttgcccaggctgtgagcctcacaccccca
ggccaagaatatccccctgctgtggtggatgctgggaagggcaggacagcagaggccagg
aagacatggctggaggagcaatgcctaattctgaagcagacgttttgtgaggtgcctgac
ctggaccgaattgtccctgtgctgctggaacatggcctggagcatctcccggagtactgt
aggctgagcccaggggttcccctgaaacccatgttggcgcatcccactcggggcgtcagc
gaggtcctgaaacgctttgaggaggcagccttcacctgcgagtacaagtatgacgggcag
agggcacagattcaccttctggaaggcggggaggtgaagattttcagcaggaatcaagaa
gataacacgggaaagtaccccgacatcatcagccgcatccccaagattaaactcccatca
gtcacgtccttcatcctggacacggaagctgtggcttgggaccgagaaaagaagcaaatt
cagccattccaagtgctcaccactcgcaaacgcaaggaggtagacccctccgagatccag
gtgcaggtgtgtctgtacgcctttgacctcatctacctcaacggagagtccctggtccgt
gaacccttgtctcgacgccggcagctgctccgcgagcactttgtagagacagagggcgag
tttgtttttgccacctccctggacaccaaggacgtcgagcagattgctgagttcttagag
cagtcggtgaaagactcctgtgaggggttgatggtgaagaccctggatgtcgatgccacc
tacgagatcgccaaaaggtcacacaactggctcaagctgaagaaggactatctggatggc
gtgggcgacaccctggacctcgtggtgatcggcgcctacctgggccgggggaagcgggct
ggccggtacgggggcttcctgctggccgcctatgacgaggacagtgaggagctgcaagcc
atatgcaagcttggaaccggcttcagcggtgaggagctagaagagcagcatcagagcctg
caggccctggtgctgcccaccccacgtccctacgtgcgggctgatggtgctgtggccccc
gaccactggctcgatcccagcgctgtgtgggaagtgaagtgtgcggacctctccctctcc
cccatctaccccgctgcccggggcctggtggacagcgagaagggcatctcccttcgcttc
cctcggtttattcgtgtccgtgaagacaagcagccagaggaagccaccaccagtgcccag
gtggcctctctgtacctgaagcaaagtcagattcaaaatcaacatgacacagactcagac
tccaaccctgaagatttctactaa
DBGET
integrated database retrieval system
