Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101969330
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Entry
101969330 CDS
T10664
Symbol
Scn9a
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
101969330 (Scn9a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
iti04040
]
101969330 (Scn9a)
Ion channels [BR:
iti04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101969330 (Scn9a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Lustrin_cystein
FraC
DUF6739
Motif
Other DBs
NCBI-GeneID:
101969330
NCBI-ProteinID:
XP_005315755
LinkDB
All DBs
Position
Unknown
AA seq
1987 aa
AA seq
DB search
MATLPPPGPQSFVHFTKQSLALIEQRIAEEKAKEPKEEKKDEEEDGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNAAPALYILSPFSRLRRISI
KILVHSLFSMLIMCTILTNCIFMTMSSPPEWTKNVEYTFTGIYTFESLVKILARGFCVGE
FTFLRDPWNWLDFIVIIFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRDELENNETLESIMNTYENEEDLK
KYFYYLEGSKDALLCGFSTDSGQCPEGYSCVKAGRNPDYGYTSFDTFSWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAVAAAEYTSIGRSRIMGLSESSSETSRLSSKSAKERKNRR
RKKNQKKLSSGEEKGDDEKLSKSGSEESIRRKSVHLGVEGHRRTREKRLSTPNQSPLSIR
GSLFSGRRSSRTSLFSFKGRGKDIGSETEFADDEHSIFGDNESRRGSLFLPHRPQERRSS
NISQASRSPPRLPVNGMKHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGT
TNQIHKKRRSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHT
FLIWNCSPYWIKFKKFIHFIVMDPFVDLTITICIVLNTLFMAMEHHPMTEEFKHVLTVGN
LVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLSDVEGLSVLRSFRLL
RVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIN
EDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVL
NLFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKKGINYVKQTLRELILKTFSKKPKM
SREIRRAEDLNGKKHNYISNRTLAEMNKDHPFLKGKDKTSGFGSSVDRSLMEGSDCQSFI
HNPSLTVTVPIAPGESDLENMNTEELSDSDSDYSKERLSRLSSSECSTVDNPLPGEGEEA
EAEPVNSDEPEACFTDGCVRRFPCCQVNIESGKGKIWWNIRKTCYRIVEHSWFESFIVLM
ILLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWL
DFLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGTRFPQNQVENRSECFALMNGSTNVR
WKNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVDVNKQPKYEYNLYMYMYFVIFI
IFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPG
NKFQGCIFDLVTNQVFDITIMVLICLNMVTMMVEKEGQSDYMTYVLYWINVVFIILFTGE
CVLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAKLIEKYFVSPTLFRVIRLARIGRIL
RLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNF
ETFGNSMICLFQITTSAGWDGLLAPILNNGPPDCDPKKVHPGSSVEGDCGNPSVGIFYFV
SYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEYSK
LSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRS
QMEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDGD
KDDDLPNKEDIVFDNVNENSSPEKTDATPSTVSPPSYDSVTKPDKEKYETDNTEKEHKGK
DGKESKK
NT seq
5964 nt
NT seq
+upstream
nt +downstream
nt
atggcaacattgccacccccaggacctcagagctttgtccacttcacaaaacagtccctt
gccctcattgaacaacgcattgctgaagaaaaagcaaaggaacccaaagaagaaaagaaa
gatgaggaggaggatggtccaaagccaagcagtgacttggaagccggcaagcagttgccc
ttcatttatggagacattccacccggcatggtgtcagagcccctggaggacctggacccg
tactatgcagacaaaaagacttttatagtattgaacaaagggaaagcaatcttccgtttc
aatgccgcacctgctttatacatactgtctcctttcagtcgtctgagaagaatatctatt
aagattttagtacactccttattcagcatgcttatcatgtgcactattctgacaaactgc
atatttatgaccatgagtagccctccagaatggaccaaaaatgtagagtacacttttact
ggaatatatacttttgaatcactcgtaaaaatccttgcaagaggcttctgtgtaggagaa
ttcactttccttcgcgacccatggaactggctggattttattgtcattatttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtcttgaga
gctttgaaaactatttctgtaatcccaggcctgaagaccattgtaggggccctgatccag
tctgtgaagaagttgtcagatgtcatgatcttgactgtgttctgcctcagtgtgtttgct
ctaattgggctgcagctgttcatgggcaacctgaagcataaatgtttccgggatgaactt
gaaaataatgaaacattagaaagcataatgaatacatatgagaatgaagaagacttgaaa
aaatatttttattacttggagggatccaaagatgctctcctttgtggtttcagcacagat
tcaggtcagtgtccagaaggatactcctgtgtgaaggctggcagaaaccctgattatggc
tacacaagctttgacactttcagctgggccttcttagccttatttcggctaatgacccag
gattactgggaaaacctttaccaacagacactgcgtgctgctggcaaaacctacatgatc
ttctttgttgtggtgattttcctgggctccttttatctaataaacttgatcctggctgtg
gttgccatggcctatgaagaacagaatcaagcaaacatcgaagaagcaaaacaaaaagaa
ctagaatttcaacagatgttggatcgcctcaaaaaagagcaagaagaagctgaggcaata
gcagtggcagcagctgaatatacaagcatcgggcgaagcagaataatgggcctctcagag
agttcgtctgaaacatccagactgagctcgaaaagtgctaaagaaagaaaaaacagaaga
aggaaaaagaatcagaagaagctctccagtggggaggaaaaaggagatgatgagaagctg
tccaaatcaggatcagaggagagcatcagaaggaaaagtgtccaccttggtgtggaaggt
catagacggacacgtgagaagagactgtccacccctaatcagtcaccactcagcatccgt
ggctccttgttttctggaaggcgcagcagcagaacaagtcttttcagtttcaagggtcga
ggaaaagatataggatctgagactgaatttgctgatgatgagcacagcatttttggagac
aatgagagcagacggggctccctgttcctgccccacaggccccaggagcgacgcagcagt
aacatcagccaagccagtaggtcccccccacggctgccggtgaacgggatgaagcacagt
gccgtggactgcaatggtgtggtttccctggttgatggaccctcagccctcatgctcccc
aatggacagcttctgccagaggtgataatagataaggcaacttctgacgacagcggaaca
actaatcaaatacacaaaaaaagacgttccagttcttatttcctttcagaggatatgcta
aatgatccccatctaagacaaagagcaatgagcagagcaagcatattgaccaacactgta
gaagaacttgaggagtccagacagaaatgtccaccttggtggtacagatttgcacacaca
tttttgatctggaattgctctccctattggataaaattcaaaaagtttatccatttcatt
gtaatggatccttttgtagatcttacaattaccatttgcatagttttaaacacattattt
atggctatggagcaccatccaatgactgaagaattcaaacatgtgctaactgtaggaaat
ttggtcttcactggaatttttgcagctgaaatggttttaaaactaattgccatggatcca
tatgaatacttccaagtaggctggaatatttttgacagccttattgtgactttaagttta
gtagaactttttctatcagatgtggaaggattatcagttctgcgatcattcagactgctc
cgtgtcttcaagttggcaaaatcctggcccacactgaatatgctaataaagatcattggc
aattccgtgggggcgctgggaaacctcaccttggtgttggccatcattgtcttcattttt
gccgtggttggcatgcagctctttggaaagagctacaaagaatgtgtctgcaagatcaat
gaagactgcacgctcccacgctggcacatgaacgacttcttccactctttcctgattgtg
ttccgagtgctgtgtggagagtggatagagaccatgtgggactgtatggaggttgctggt
caagccatgtgccttattgtttacatgatggtcatggtgattggaaacctcgtggttctg
aacttatttctggctttattgctgagttcatttagttctgacaatctcacagcaattgag
gaagacaccgatgcaaacaacctccagattgctgtggccagaatcaaaaagggaataaat
tatgtgaaacagaccttgcgtgaactcattttgaaaacattttccaaaaagccaaaaatg
tccagggagataagacgagcagaagatctaaatggcaaaaaacacaactatatctcaaac
cgtacacttgctgaaatgaataaagatcaccccttcctcaagggaaaagataaaaccagc
gggtttggaagcagtgtggacagaagcttgatggaaggaagcgactgtcaatcctttatt
cataatcccagcctcacagtgacagtgccgattgcacctggagaatctgatttggaaaat
atgaatactgaggaacttagtgattcagacagcgactacagcaaagagagattaagccga
ttgagttcctctgagtgcagcacagttgataaccctctgccaggagaaggagaggaagcc
gaggctgaacctgtgaattcagatgagccagaagcctgttttacagatggttgtgttcgg
agattcccatgctgccaagttaacatagagtcagggaaaggaaaaatctggtggaatatc
aggaaaacctgctatcggatagttgaacacagttggtttgaaagcttcattgttctcatg
atcctcctcagcagtggagctctggcttttgaagatatatatattgaaaagaaaaagacc
attaagattattctggagtatgctgacaagatattcacctacatcttcattctggaaatg
cttctaaaatgggtggcatatggttataagacatatttcaccaatgcctggtgttggctg
gatttcttaattgttgatgtttctttggttactttagttgcaaacactcttggctactca
gatcttggccccattaaatctcttcggacgctgagagctttaagacctctaagagcctta
tctaggtttgaaggaatgagggtggttgtgaatgcactcatcggagcaatcccttccatc
atgaacgtgcttcttgtgtgcctaatcttctggctgatatttagcatcatgggagtaaac
ttgtttgctggcaagttctacgagtgtgttaacaccacagatgggacacggtttcctcaa
aatcaagttgaaaatcgttctgagtgttttgccctgatgaatgggagcacaaacgtgaga
tggaaaaacctgaaagtgaactttgacaacgttgggcttggttacctgtctctgcttcaa
gttgccacatttaagggatggatggacatcatgtatgcagcagttgattctgttgatgta
aacaagcagccgaaatatgaatacaatctctacatgtatatgtattttgtcatctttatc
atctttgggtcattcttcactttgaacttgttcattggtgtcatcatagataatttcaac
caacagaaaaagaagcttggaggtcaagacatctttatgacagaagaacagaagaaatac
tataatgcaatgaaaaagctggggtccaaaaaaccacaaaagccaattcctaggccaggg
aacaaattccaaggatgtatatttgacctcgtaacaaaccaagtttttgatattactatc
atggttctgatctgcctcaacatggtaaccatgatggtagagaaagagggacaaagtgac
tacatgacttatgttttatattggataaatgtggtttttattatccttttcactggagaa
tgtgtgctcaagctgatctccctcagacattactacttcactgtaggatggaacattttt
gattttgtggttgtgatcctctccattgtaggtatgtttcttgctaagctgatagaaaaa
tattttgtgtccccaaccctgttccgagtgatccgtcttgccaggattggccgaatccta
cgcctgatcaaaggggctaaggggatccgcacactgctgtttgctttgatgatgtccctt
cctgccttgtttaacatcggcctcctgctcttcctggtcatgttcatctacgccatcttt
ggaatgtccaactttgcctatgttaagaaagaagctggaattaatgacatgttcaacttt
gagacctttggcaacagcatgatttgcctgttccaaatcaccacctctgctggctgggat
ggattgctggcacctattctcaataatggcccacctgactgtgacccaaaaaaagttcat
ccaggaagttcagttgaaggagactgtgggaacccttctgttgggattttctattttgtc
agttacatcatcatatcctttctggtcgtggtgaacatgtacatcgctgtcatcctggag
aacttcagtgttgctactgaagaaagtgcagagcccctgagcgaggatgactttgagatg
ttctatgaggtttgggagaagtttgatcccgatgcaacccagtttatagaatatagcaaa
ctctctgattttgcagctgccctggatccccctcttctcatagcaaaaccaaacaaagtc
cagctcattgctatggacctgccaatggtcagtggtgaccgaattcactgtcttgacatt
ttatttgcttttacaaagcgtgttttgggtgaaagtggagagatggattctcttcgttca
cagatggaagaaaggttcatgtctgcaaatccttctaaagtatcctatgaacccatcaca
actacactaaaacgaaaacaagaggatgtatctgctactatcattcagcgtgcttataga
cgttaccgcttgcggcaaaatgtcaaaaatatatcaagcatatatataaaagatggagac
aaagacgatgatttgcccaataaagaagatatagtttttgataatgttaatgagaactca
agtccagaaaaaacagatgcaaccccatccactgtctccccaccttcatatgatagtgta
acaaagccggataaagagaaatatgaaacagacaacacagaaaaggaacacaaaggaaaa
gatggcaaggaaagtaaaaaatag
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integrated database retrieval system
