Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101969560
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Entry
101969560 CDS
T10664
Symbol
Afdn
Name
(RefSeq) afadin isoform X13
KO
K05702
afadin
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04014
Ras signaling pathway
iti04015
Rap1 signaling pathway
iti04024
cAMP signaling pathway
iti04520
Adherens junction
iti04530
Tight junction
iti04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
101969560 (Afdn)
04015 Rap1 signaling pathway
101969560 (Afdn)
04024 cAMP signaling pathway
101969560 (Afdn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
101969560 (Afdn)
04530 Tight junction
101969560 (Afdn)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
101969560 (Afdn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
RA_3
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
101969560
NCBI-ProteinID:
XP_021579634
LinkDB
All DBs
Position
Unknown
AA seq
1801 aa
AA seq
DB search
MRFYFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEE
RRLDTDEKPLVVQLNWNKDDREGRFVLKNENDAAPAKKVQSNGPEKQEKEGVIQNFKRTL
SKKEKKEKKKREKEALRQTSDKEDGPSRGDDSENSRLAAEVYKDMPETSFTRTISNPEVV
MKRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEA
LEKYGLEKENPKEYCIAQVMLPPGAQHSDERGAKEIILDDEECPLQIFREWPSDKGILVF
QLKRRPSDYIPKKAKKLVEGKPLKGKERADSSGYGSALPPEKLPYLVELSPAPGRRSHFA
YYSCHTYEDGSDSRDKPKLYRLQLSVTEVGTERLDDNSIQLFGPGIQPHHCDLTNMDGVV
TVTPRSMDAETYVDGQRISETTMLQSGMKVQFGVSHVFKFVDPSQDHALAKRSVDGGLMG
KGPRHKPGTVPETTFDLGGDVHSGTALPTSRSTTRLDSDRVSSTSSTAERGMVKPMIRVD
QQQDYRRQESRTQDAAGPELMLPASIEFRESAEDSFLSAIINYTNSSTVHFKLSPTYVLY
MACRHVLSSQHRPDVSPTERTHKVIAVVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWM
ANASELLNFIKQDRDLSRITLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEEN
SLQRPKIDDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCS
HYWGAIIRQQLGHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYAPDDIPNINSTCFK
LNSLQLQALLQNYHCAPDEPFIPTDLIDNVVAVAENTADELARSDGRDVQLEEDPDLQLP
FLLPEDGYSCDVVRNIPNGLQEFLDPLCQRGFCRLIPHVRSPGTWTIHFEGADYESHFLR
ENTELAQPLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRL
AAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQR
ISDRRGSGKPRPKSEGFELYNNSAQNGSPESPQLPWAEYSEPKKLPDDRLMKNRADHRSS
PNVANQPPSPGGKSPYSSGTTAKITSVSTGNLCAEEQSPPPRPEAYPIPTQTYTREYFTF
PASKSQDRMVPPQNQWPDYEEKPHMHTDSSHASVAIQRVARSQEELREEKAYQLERQQVE
AVMDRKSDSDLWINQSSSVESSTSSQEHLNHSSKSATPASTLTKSGPGRWKTPAAVLPTP
VAISQPIRTELPPPPPPPPVHYAGDFDGMPMDLPLPPPPANQVVPQSAQAAAERKKREEH
QRWYEKEKARLEEERERKRREQERKLGQMRTPPLHPASFPPLATPQAKPEKPSTLQRPQE
TVIRELQPQQQPRTIERRDLQYITISKEELSSGDSLSPDPWKRDAREKLEKQQQLHIVDM
LSKEIHELQSRAERTAEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTMLIMQ
RLEAERRARQTAVPAISVLDLLQDEERRRQQQLEDMRRREAEDRVRQEEERRLEEERAKR
DAEEKRRQEEGYYSRLEAERRRQHEEAARRLLEPEEPGLCRPPLPRDYEPPSPSPVPSAP
PPPPQRNASYLKTQVLSPDSLFTAKFVSYNEEEEEEEDCSLAGPNPYPASAGAVSGAHDV
PRDAREKHTRSQDADLPGSSGAPENLTFRERQRLFSQGQDVSNKVKASRKLTELENELNT
K
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgagattttattttcaagataaagctgctggaaactttgccacaaaatgcatccgcgtc
tctagcactgctaccacccaagatgtgattgaaactctggcagagaaattccgccccgac
atgcgcatgctgtcgtctcccaagtattcactgtatgaagtgcacgtcagcggagaagaa
agaagattggacactgatgagaagcctctagttgtgcagttgaattggaacaaagatgac
cgggaaggcagatttgtgctcaagaatgagaacgacgcagcccctgctaagaaggttcaa
agtaatggaccagaaaagcaggagaaagaaggtgttatacagaacttcaagagaacgctc
tcaaagaaagaaaagaaagaaaaaaagaagagagaaaaggaggccttgagacagacgtct
gataaggaggatggaccttctcgaggggatgacagtgagaattcccgactggctgctgag
gtatacaaggacatgccagaaaccagctttactcggaccatttctaatcctgaagtggtt
atgaaacgacggcggcagcaaaagctggagaagaggatgcaggagttccgaagctcagat
gggaggcccgattcaggtggaacgttgagaatttatgcagatagtttaaaaccaaacatt
ccctataagacaatcctactgtctactacggatcctgcagactttgctgtggcggaagct
ttagagaaatatggtctggaaaaagaaaatcctaaggagtactgcattgctcaggttatg
cttccccctggagcccagcattctgatgaaagaggtgctaaagaaattatccttgatgat
gaagagtgtcctttacagatcttcagggaatggccaagtgacaaagggattttagtcttt
cagttgaagaggaggccatcagactacatcccaaagaaagcgaagaagcttgtggaaggg
aagccactgaaggggaaggagagagcagacagctcaggctacggatctgctctcccccct
gagaagctgccctacttagtggagttaagcccagccccagggagaaggagtcactttgcc
tactacagctgtcacacttacgaagatggctctgactccagagacaagccaaagctttac
cgccttcagctgagtgtgactgaagttgggacagaaaggttggacgacaactccatccag
ctctttggcccaggaatccagcctcatcactgtgacctcaccaacatggatggtgtggtc
accgtgacacctagaagtatggatgcggagacttacgtggacggccagcgcatctcggag
accaccatgctgcagagtggcatgaaagtgcagtttggggtgtcgcatgtgtttaagttt
gtggaccccagccaggaccatgctcttgccaagagatctgtggacggaggcctgatgggg
aagggcccaagacataagcctgggactgttccagaaacaacctttgacttgggaggagat
gtccacagtgggacagcattgccgacaagcaggagtaccaccaggctggacagcgacagg
gtgtcctccacctccagcacggctgaacgagggatggtgaagcctatgatccgcgtggat
cagcagcaggactaccgcaggcaggagagcagaactcaggatgctgctgggccagaactg
atgctgcctgccagcatcgaattcagggaaagtgctgaagactcctttttatctgccatt
atcaattacacgaatagctctacagtacattttaagttgtcccccacttatgtgctgtac
atggcatgtcggcatgtactgtccagccagcacaggcccgatgtcagccccacggagcgc
acgcacaaggtcatcgccgtggtcaacaagatggtgagcatgatggaaggggtcattcag
gaggtagaccaggttgatcagaagcagaagaacatcgcaggggcacttgccttctggatg
gccaacgcatctgagctgctcaacttcatcaagcaggaccgagaccttagtcggatcacg
ctcgatgcccaggacgttctagcacacctggttcagatggcatttaaatacctggtccac
tgtcttcagtcagaactgaataactacatgcccgcctttctggatgatcctgaagagaac
agtctgcaaagaccaaaaatagatgatgtgctgcacacactcacgggagccatgtccttg
ctgcggcgctgcagagtcaatgctgccctgactatccagcttttctctcagctgttccac
ttcatcaatatgtggctgttcaacagattggtgacagacccggattcagggctgtgctcc
cactactggggagcaattatccgccagcagttgggacatatcgaagcctgggcagagaag
caggggctagaactggctgcggactgtcacttgagcaggatcgtgcaggcaactactttg
cttaccatggacaagtatgcacctgatgacattccaaatataaacagcacctgctttaag
ttaaattcactgcagcttcaagccttactacaaaattatcactgtgcacctgatgagcct
tttatccccacggatctcatagacaacgtggtggctgtggctgagaacacagcggatgag
ctagcccggagtgatgggagggatgtacagttggaggaggatcctgacttgcagttgcct
ttcctcttgccagaagatggctattcttgtgacgttgtcagaaacattccaaatggctta
caggagtttttagaccctctgtgccagagagggttttgcaggctgattcctcatgtgcgc
tcaccaggtacttggacaatacattttgaaggtgcagattatgaaagccactttctgcgt
gagaacacagaactggcccagcctttaaggaaagagcctgaaataatcactgtgacccta
aagaagcagaatggaatgggcctcagcatcgtggcagcaaagggcgctggccaggataaa
ctgggcatctatgtcaagtccgtcgtgaaaggaggcgctgcagatgtggatggacgacta
gcagcaggagaccagctcctcagtgtggatggacgcagtctggtggggctctctcaggaa
agggcagcagaactcatgacaagaacaagttccgtggttacactcgaggtagcaaagcaa
ggtgccatctatcacggcctggccaccctcctcaaccagccatcccccatgatgcagaga
atttcagatcgacgtggctcaggtaaaccccgaccaaagagtgaaggttttgagctctat
aataattcagctcaaaatgggtcgccagagagtcctcagctgccctgggcagagtacagt
gagccaaagaaattgccagatgacagactgatgaaaaacagagctgaccatcgctctagc
cccaacgtggcaaatcagccgccgagtcctggagggaagagcccatattcctctggaacc
acagccaagataacgtctgtctccacggggaacctctgcgctgaggagcagagccctcca
cccagacctgaagcctaccccatcccgactcagacatataccagagaatatttcacgttc
ccagcctccaaatcccaggatcgcatggttcctcctcagaaccagtggccagactatgag
gagaagccccacatgcacacagatagcagtcatgccagtgttgccattcagcgtgttgcc
cgttcccaagaagagcttcgggaagagaaagcttaccagcttgagcgacagcaagtagag
gcagttatggatcggaaatctgacagtgacctgtggataaatcagagctcctcagtggaa
tccagcacctccagccaagagcacctgaaccattcctccaagtctgccacccctgcttcc
acactgaccaaaagtggccctggccgatggaaaacaccagcagcagtgctgcccacccca
gtggccatctcccagcccatcagaacagagctgcctccgcctccacctccacctcctgtc
cactacgctggagactttgatgggatgccaatggatttgcctctcccacctcctcccgcc
aaccaggtggttccacagtcagctcaggcagctgcagaacggaagaagagggaggagcac
cagaggtggtatgagaaggagaaggcccgcctggaagaggagcgtgagaggaagcgcagg
gagcaggagaggaagctgggccagatgcgcacaccacctctgcatcctgcctccttccct
cccctggccacccctcaggcaaagcctgagaagccatccacactccagaggccccaggag
acagttattcgagagctgcagccccagcagcagccccgtaccatcgagcgcagagacttg
cagtatatcaccatcagcaaagaggagctttcctctggagacagcctgtctccagacccc
tggaagcgggacgccagggagaagctggagaagcagcaacaactgcacatcgtggacatg
ctgagcaaggagatccacgagctacagagcagggcagagcgcactgcagaggagagtgat
cgtctgcgcaagctcatgctggagtggcagttccagaagagactgcaggagtccaagcag
aaggacgaggacgacgaggaggaggaggatgatgacgtggacaccatgctgatcatgcag
cgcctggaggccgagcggagagccaggcagactgctgtgccagcaatctctgttctagat
ttgttgcaggacgaggagcgcagacgccagcagcagttggaggatatgcgcaggcgggaa
gcagaagaccgtgtgagacaggaggaggagcggcgtctggaggaggagcgagccaagcgg
gacgccgaagaaaagaggcgacaggaagaagggtattacagccgcctggaggccgagagg
cgcagacagcacgaggaggcggcgcgcaggttgctggagcccgaggagcccgggctgtgc
cgacctccgcttccacgggactacgagcccccatccccgtcccctgtgcccagcgcccct
cctcccccacctcagcgaaacgcctcctacctcaaaacacaggtcctctccccagactcg
ctgttcactgccaagtttgtttcgtacaatgaggaggaggaggaggaggaggactgcagc
ctagcaggaccgaacccttacccagcatctgctggggcagtcagcggtgcccatgatgtt
cctcgggatgcaagagagaagcacaccagaagccaagatgcagatttacctggaagttcc
ggagcccctgaaaacctgacattcagagagcgtcagcgccttttttcacaaggtcaagat
gtgtccaataaagtgaaagcttcccgtaaattaacagaactggagaatgaactaaacaca
aagtga
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integrated database retrieval system
