Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101969965
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Entry
101969965 CDS
T10664
Symbol
Col6a3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X5
KO
K06238
collagen type VI alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101969965 (Col6a3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101969965 (Col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101969965 (Col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101969965 (Col6a3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101969965 (Col6a3)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101969965 (Col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
iti04147
]
101969965 (Col6a3)
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101969965 (Col6a3)
Exosome [BR:
iti04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101969965 (Col6a3)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101969965 (Col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
101969965 (Col6a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
fn3
Motif
Other DBs
NCBI-GeneID:
101969965
NCBI-ProteinID:
XP_013214604
LinkDB
All DBs
Position
Unknown
AA seq
2556 aa
AA seq
DB search
MRKHRHLPVVAILCLFLSGFSMTYAQQQQAVIEVNKRDIVFLLDGSSKLGLANFNAIRDF
IAKILQRLEIGQDLVQVAVAQYADTVRPEFYFNSHPTKREVIAAVRKMKPLDGPALNTGS
ALDFVRNNLFVSSAGYRATEGVPKLLVLITGGKSLDEVSQPAQELKRSSIMAFAIGNQAA
DPAELEEIAFDSSLVFKPAEFRVTSLQGVLPSLLAPLRTLSGTTEESKRDVLFLFDGSAN
LVGQFPVVRDLLYKIIEELDVKPEGTRIAVAQFSDDVKVESRFNEHPNKPDILNVVKRMK
IKTGRALNLGYALDYAQRYIFVKSAGSRIEDGVLQFLVLLVAGRSSDSVDGPASNLKQSG
VVPFILQAKNADPAELERIVPSPAFILAAESLPKIGDLQPQIVHLLKSVHSGAPQPVLGE
KDVVFLIDSSEGVRSGFTLMKEFVQRVVESLDVGPDRVRVALVQYSDRTRPEFYLNSYMD
QQSVISAVRRLTLLGGPVPNTGAALDFVLRNILISSAGSRIEDGVPQLLIVLTAERSGDD
VRGPSVVLKRGGAVPIGIGIGNADISEMQTISFIPDFAVAIPTFRELGTVQQVISERVTQ
LSREELSRLQPIFPQPPSPGTGSKKDVVFLIDGSQGAGPEFQHIRSLLERLVEYLDVGFD
TTRVAVIQFSEDPKVEFLLNAHASKDEVLNAVRRLRPKGGRQVNVGNALEYVSRNIFKRP
LGSRIEEGVPQFLVLISSGKSDDEVEDGAVELKQFGVAPFTVARNADREELVKISLSPEY
VFSVSTFRELPSLEQKLLTPITTLTSEQIQQILANTRYPPPAVESDAADIVFLVDGSEGV
QTDGFANIRDFITRIVRRLNIGPSRVRVGVVQFSNEVFPEFYLKTYKSQAPMLEALRRLR
LRGGSPRNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGRSQDDVSRFSKVISSSG
IMTLGIGDQNVDRAELQTIASNSRLVFPVREFRDLPNIEVRVMNSFGPSGATPGPSVETP
PPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPT
DEFYLRDFSTKRQIIDAINKVVYKGGRHANTRVGLEHLRMNHFVPEAGSRLDQRVPQIAF
VITGGKSVEDAQDVSMALTQKGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQELSEL
SEQVLETLHDAMHETLCPGVTDVSKACNLDVILGFDGSRDQNVFVTQKGLEAKMDVILNR
ISQMQRISCSGGQLPTVRVSVVANTPSGPVEAFEFHEYQPELFETFRNMRNEHPYILTAD
TLKVYQNRFQKSSPDIVKVVIHFTDGADGDLADLHRASEALRQEGVHALILVGLERVANL
EQLTQLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGERGDRGPIGT
IGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGELGE
IGLDGLDGEEGDKGLPGSSGEKGSPGRRGDKGPKGDKGERGDVGIRGDPGESGRDSQQRG
PKGETGDIGPMGLPGRDGVSGSPGETGKDGGFGRRGPAGAKGNRGGPGQLGFEGEQGTRG
AQGPPGPIGPPGLMGEQGISGPRGSGGPAGAPGERGRTGPLGRKGEPGEPGPKGGVGNRG
PRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGVPGEPGGAGTPGPKGIRGRRGNSGL
PGAVGQKGDPGYPGPSGHKGNRGDSIDQCALVQSIKDKCPCCYGPLECPVFPTELAFALD
TSEGVTQDTFSRMRDVLLKVVDGLTIAESNCPRGARVAVVTYNSEVTTEIRFADSRKKSA
LLESIRNLQVPLTSKQQSLETAMSFVARNTFKRVRSGFLMRKVAVFFSNKPTRASPQLRE
AVLKLSDAGITPLFLTSQEDRQLVSALQINNTAVGHALVLPARRDLTDFLKNVLTCHVCL
DICNIDPSCGFGSWRPAFRDRRAAGSDEDIDLAFILDSSEATTLFQFNEMKKYIGYLVRQ
LDLSPDPKASQHFARVAVVQQAPFESVSNASVPPVRVEFSLTDYGSKEKLLDFLSRGMTQ
LQGTQALGSAIEYTIENVFESAPNPRDLKIVVLMLTGKMQQQQLEEAQRAVLQAKCKGYF
FVVLGIGRKVNVKEVYGFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENAFYL
SPDIRKQCDWSQGDQPVTAMKFGHKQVNIPNNVTSSPTSKPVTTTKPVTTTKPVTTTTKP
ATIVNLPPAKPAAARPVPAKPAAAKPVATKPATARPAVVAKAAAAAKPAAVRPPAPPAKP
AATKPEAPRSQAKPAATKPVAAKPMAKVSREVQVSEITENSARLHWEKPEPPSSYFYDLA
VTLAHDRSLVLRQNLTVTSRVIGGLLAGQTYHVVVVCYLRSQVKAIYQGSFSTKKTQLPL
PPPQPARSASSATINLMVNTEPLALTETDICKLPMEIGTCRDFTLKWYYDPGTKNCARFW
FGGCGGNENNFESQEQCEKVCGHVLTKPGVIDVVGT
NT seq
7671 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagcatcggcatttgcccgtagtggccatcctttgcctctttctctcaggcttt
tccatgacctatgcccaacagcaacaagcagtcatcgaggtcaacaagagggacatagtc
ttcctgttggatggctcttccaagctgggcctggccaacttcaatgccatccgagacttc
attgccaagatcctccagaggctggaaatcggacaggatctcgtccaagtggcagtggct
cagtacgcagacactgtgaggcccgagttttacttcaatagccaccccaccaaaagggaa
gtcattgcggccgtgaggaagatgaagcccctggacggcccggccctgaacacgggctct
gctctggactttgttcgcaacaacctgttcgtcagctcggccggctaccgggccacagag
ggggttcccaagctcctggtgctgatcacaggtggtaagtccctagatgaggtcagccag
cccgcccaggagctgaagaggagcagcatcatggcgttcgccatcgggaaccaggctgcc
gacccagcggagctggaagagatcgccttcgactcctccctggtgttcaagcccgctgag
ttccgggtaacctctctgcagggtgtgctgccaagcctgctggcgcctctgcggaccctc
tctggaaccactgaagagagcaagagagacgttctgttcctctttgatggctcagccaac
ctcgtgggtcagttccctgttgtccgcgaccttctctacaagatcatcgaggagcttgac
gtgaagccagaggggacccggattgcagtggctcagttcagtgacgacgtcaaggtggag
tcccgcttcaatgagcatccaaacaagcccgacatcctgaatgtcgtgaagaggatgaag
atcaagacaggcagagccctcaacctgggctacgccctggactatgcccagaggtacatc
ttcgtcaagtctgcgggcagccgcatcgaggatggggtgctgcagttcctcgtgctgctg
gtggctgggcggtcctcggactccgtggatgggccagcaagtaacctgaagcagagtggg
gtggtgcctttcatcttacaagccaagaacgcagaccctgccgagctggagcgcatagtg
ccatcccctgccttcatcctggctgccgagtccctccccaagatcggagatcttcagcca
cagattgtccatctcttgaaatctgtgcacagtggagccccacaaccagttttaggtgaa
aaggacgtggtgtttctgatcgacagctctgagggcgtcaggagcggcttcaccctgatg
aaggagtttgtgcagagagtggtggagagcctggatgtgggccctgatcgcgtccgcgtg
gccctggtgcagtacagtgaccggaccaggcctgagttctacctgaattcctacatggac
cagcagagtgtcatcagtgctgtccgcaggctgaccctgctgggcgggccggtccccaac
accggggccgccctggactttgtgctgaggaacatcctgatcagctctgcaggaagcagg
atagaagacggtgtcccccagcttctgatcgtgctcacggccgagaggtctggtgatgac
gtgaggggcccttcggtggtcctgaagaggggcggggcagtgcccatcggcattggcatt
ggcaacgctgacatctcagagatgcagaccatctccttcatcccagacttcgctgtggcc
atccctaccttccgggagctgggcactgtccagcaggtcatctctgagagggtgacccag
ctgagccgtgaggagctgagcaggttgcagccgattttcccgcaaccaccgagcccagga
actgggagcaagaaggacgtggtcttcctcattgatgggtctcaaggtgctggccccgag
ttccagcacatacgctccctcctcgagaggctggtggagtacctggacgtgggcttcgac
accacccgggtggcagtcatccagttcagcgaggaccccaaggtggagtttctgctgaat
gcccacgccagcaaggacgaggtgctgaacgcggtaaggcggctgcggcccaagggcggg
aggcaggtcaacgttggaaatgcgctggagtacgtgtccaggaacatcttcaagaggccg
ctggggagccggatagaagagggtgtcccgcagttcctggtccttatctcgtcgggcaag
tctgacgacgaggtggaggacggtgctgtggagctcaagcagtttggggtggcccctttc
accgtggccaggaacgcagaccgggaggagctggtgaagatctctctgagtcctgagtac
gtgttctccgtgagcaccttcagggagctgcccagcctggagcagaaactgctgaccccc
atcaccacgctgacctctgagcagatacagcagatcctggcaaacacccgctaccctccc
ccggctgtggagagcgacgccgcggacatcgtcttcctggtcgacggctccgagggcgtg
cagacggatggctttgccaacatccgggattttattaccaggatcgtccggagactcaac
atcggccccagcagagtgagagtcggggtggtgcagttcagcaacgaggtcttccctgag
ttctacctcaagacctacaagtcccaggcgcccatgctggaggccctccggcgcctgagg
ctccgcggcggctctccgcggaacacgggcaaagcgctggagttcgtggcgagaaacctc
ttcgtcaagtctgcggggagccggatagaggacggcgtgccccagcacctggtcctggtt
ctgggcggaaggtctcaggatgacgtttccaggttctccaaggtcatcagttcctcgggg
atcatgaccttgggaataggagaccagaacgtggacagggccgagctgcagaccatcgcc
agcaactcgaggctggtcttcccggtgcgggagttcagagatctccccaacatagaagtg
agggtcatgaactccttcggaccctctggggctactcctgggccttccgtggagacaccg
cctccttcaaggccagagaagaagaaagcggacattgtgttcctgttggacgggtccatc
aatttcaggagggacagtttccaggaggtgctccggttcgtgtctgaaattgtggacacg
gtttatgaagacggcgactccatccaagtggggctagtccagtacaactccgaccccacg
gatgagttctacctgcgggacttttccaccaagaggcagatcattgacgccatcaacaag
gtggtctacaaagggggtagacacgccaacaccagggtgggcctggagcacctgaggatg
aatcactttgtgcctgaggcgggcagccgcctggatcagagggtccctcagatcgccttt
gtgatcaccggcgggaagtcggtggaggacgctcaggatgtgagcatggcgcttacccag
aaaggtgtcaaagtgtttgcagtcggtgtgaggaacatcgactcggaggaggtggggaaa
attgcgtccaacagtgccacggccttccgtgtgggcaatgtccaggagctgtcggaactg
agtgagcaggtcctggaaacactgcacgatgcgatgcatgagaccttgtgtcctggtgtg
accgacgtctccaaagcctgtaacctggatgtgattctggggtttgatggatcaagagat
cagaatgtgtttgtgactcagaagggcctggaggccaagatggacgtcatcttgaacagg
atcagccagatgcaaagaatcagctgcagtggtggccagctgcccactgtgcgggtatcg
gtggtagccaacacaccctcggggcccgtggaggcctttgagttccacgagtaccagcca
gagctgtttgagaccttccgcaacatgcgcaatgagcacccctacatcctcaccgccgac
acgctcaaggtctatcagaacaggttccagaagtcctcgccagacatcgtgaaggtggtt
attcacttcactgatggcgcagacggagatctggccgacctgcacagagcttccgaggct
ctccggcaagaaggagtccacgccctgatcctggtgggcctggagcgggtggccaacctg
gagcagctgacgcagctggagttcgggcgagggttcatgtatgacaggcccctgcggctc
aacctgctggacttagattatgaactggcggagcagctcgacaacattgctgagaaggct
tgctgtggggttccctgcaagtgctctggagaaaggggagaccgcgggcccatcggcacc
atcgggccaaagggcattcctggagaagacggctaccgaggttaccctggtgatgagggc
ggacccggcgagcgaggtccccctggtgtgaacggcactcaaggcttccagggctgcccg
ggccagagaggagtgaagggctctcgaggattcccaggagagaagggcgaattgggagag
atcggcctggacggtctcgatggggaagagggagacaaggggctgccggggtcttctgga
gagaaggggagcccggggagacggggtgacaaaggacctaagggagacaaaggagagaga
ggggacgtggggatccgcggcgacccgggtgaatcaggacgggacagccagcagagagga
cccaaaggagagactggcgacatcggccccatgggtctcccagggagagacggcgtatca
ggaagtccaggagaaactgggaaggatggcggctttggccgaaggggacccgcaggagct
aagggcaacaggggcggtccaggccagctgggcttcgagggagagcagggcaccagaggc
gcacagggcccgcctggtcccattggtcctccaggcctgatgggggagcaaggtatttct
ggacctcggggaagtggaggtcctgctggggctcctggagaacgcggcagaaccggtccc
ctgggaagaaagggcgagcctggagagccagggccaaagggaggagtcgggaaccgcggc
cctcgcggggagacgggagatgacgggcgagatggagttggcagtgaaggacgcagaggc
aaaaaaggagaaagaggattccctgggtacccaggaccaaagggagtccctggtgagccg
gggggagctggaacacctgggcccaaaggcatccgaggccgaaggggaaattcaggactt
ccgggggccgtcggacagaagggagaccctggctacccgggaccatccggtcacaaaggc
aatcgaggcgactccattgaccaatgtgccctggtccagagcatcaaagacaaatgccct
tgctgctatgggcccctggagtgccccgtcttcccgacggagctagcctttgctttggac
acctctgagggggtcacccaggacacgttcagccgcatgcgagacgttcttctgaaggtg
gtggacggcttgaccattgcggagagcaactgccccaggggggcccgtgtggctgtggtc
acctacaacagcgaggtgaccacagagatcaggtttgccgactccaggaagaagtccgcc
ctcctggagagcatcaggaacctccaggtgccactgacgtccaagcagcagagcctggag
acagccatgtccttcgtggccagaaacacgtttaagcgtgtgaggagcgggttcctgatg
cggaaggtggccgtcttcttcagcaacaagcccaccagggcctccccgcagctccgggag
gccgtgctcaagctctcggacgcgggcatcaccccgctgttcctcacgagccaggaggac
cggcagcttgtcagcgccctgcagatcaacaacacagcggtggggcacgccctcgtcctg
ccggcaaggagggacctcacggacttcctgaagaacgtgctcacttgccacgtttgcctg
gacatttgcaacatcgacccgtcctgcggatttggcagctggaggccagccttcagggac
aggagagcagcaggcagcgatgaggacattgacctggctttcatcctggacagctcggag
gccaccactctgttccagttcaacgagatgaagaagtacataggctacctggtcaggcag
ctggacctgagcccagaccccaaggcctcgcagcactttgccagggtggccgtggtgcag
caagcccccttcgagtctgtgagcaacgccagcgtgccgcctgtgcgggtggagttctcc
ctgacggactacggctccaaggagaagctgctggacttcctgagccggggcatgacgcag
ctgcaggggacccaggccttgggcagtgccatcgagtacaccatagagaacgtctttgaa
agcgcccccaatccccgggacctgaagatcgtggtgctgatgctgacgggcaagatgcag
cagcagcagctggaggaggcccagagagccgtcctccaggccaagtgcaagggctacttc
tttgtggtcctgggcattggcaggaaggtgaacgtcaaggaggtgtatggctttgccagc
gagcccaacgacgtctttttcaaactagtggacaagtcgactgagctcaacgaggagcct
ttgatgcgctttgggaggttgctgccatcctttgtcagcagtgaaaatgctttttacttg
tccccagatattaggaaacagtgtgattggtcccaaggggaccaaccagtaactgctatg
aagtttggtcacaaacaagtaaacattccaaataatgttacatcaagtccaacatccaaa
ccagtgaccacaacgaagccagtgaccacaacaaagccggtgaccaccacaacaaaacca
gccaccattgtgaacttgccgcctgctaagccagctgctgcacgacctgtccctgccaag
cctgcggctgccaagcctgtggccaccaagccggccacggcacgacctgcagtggtggct
aaggcagcggcagcagcaaaacctgcagctgtgagaccccctgcccctcctgcaaagcca
gcagccaccaagcccgaggctcctaggtcccaggccaagccagctgccacgaagccagtt
gctgccaagcccatggctaaggtgtcccgagaagtccaggtatctgagatcaccgagaac
agtgccagactccactgggagaagcctgagcctcctagttcgtatttttacgaccttgct
gtcaccttggcccacgaccggtccctggttctgaggcagaacctcacagtcaccagccgc
gtcattgggggcctgctggccgggcagacctaccatgtggtggtggtctgctacctgcgg
tcacaggtcaaagccatctaccaaggaagcttcagtaccaagaaaactcagcttccactt
ccgcctccacaaccagcaaggtcagcttctagtgcgaccatcaatctaatggtgaacaca
gaacccttggctcttactgagacagatatatgtaagctgcccatggagataggcacctgc
agggacttcaccctcaagtggtactacgacccaggcaccaagaactgcgccaggttctgg
ttcggaggctgtggtggaaacgagaacaactttgaatcacaggaacaatgtgaaaaagtt
tgcggtcatgtgctcaccaaacctggagtcatcgacgtggttggcacctaa
DBGET
integrated database retrieval system
