KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970009
Entry
101970009         CDS       T10664                                 
Symbol
Utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog isoform X1
  KO
K14548  U3 small nucleolar RNA-associated protein 4
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:iti00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    101970009 (Utp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:iti03009]
    101970009 (Utp4)
Ribosome biogenesis [BR:iti03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    101970009 (Utp4)
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WD40_Prp19 WD40 WDR55 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_NUP159_NUP214 EIF3I Beta-prop_TEP1_2nd Beta-prop_Vps41 Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_BBS7 NBCH_WD40 Beta-prop_SPT8 Beta-prop_RSE1_2nd PROPPIN Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_IFT122_1st DUF7165 PQQ_2
Other DBs
NCBI-GeneID: 101970009
NCBI-ProteinID: XP_005318420
UniProt: I3MQK3
LinkDB
Position
Unknown
AA seq 686 aa
MGEFKVHRVRFFNYVPPGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
RATEALCWAEGQRLFSAGLNGEILEYDLQALNVKYALDAFGGPIWSMTASPSGSQLLVGC
EDGSVKLFQITPDNIQFERNFDRQKSRILSLSWHPSATHIAAGSIDYISVFDVKSGSAVR
KMIVDRQYMGVSKRKCIVWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKSHLISNADVQ
SIAVADQEDSFVVGTAEGTIFHFQLVSVTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTAL
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRCLISCSKKKQLLLFQFAHHLELWRL
GSTAATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRVFLYRLNY
EHDNINLKRVSKMPAFLRSALQIMFSEDSKKLFVASNQGSLHIFQLLEGSFKHLHTFQPQ
SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKHLKLHCTVPAYNFPVTALAIAPITNN
LVIAHSDQQVFEYSIPEKQYTEWSRNIQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD
AYMFCIIDKSLPLPNDKTLLYNPLPPTNESDVFRRRTAHAFKISKIYKPLLFMDLLDERT
LVAVERPLDDIIAQLPPPIKKKKFGT
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgggtgaatttaaggtccatcgagtacgtttctttaattatgtaccaccagggatccgt
tgtgtggcttacaataaccagtcaaacagattggctgtttcacgaacagatggcactgtg
gaaatttataacttgtcagcaaactactttcaagagaaatttttcccaggtcatgagtct
cgagctacagaagctctgtgttgggcagaaggacagcgactttttagtgctggactcaat
ggagaaatccttgagtatgacttacaggcattaaatgtcaagtatgccttggatgccttt
ggaggacctatttggagtatgactgccagccccagtggctctcaacttttggttggctgt
gaagatggatctgtgaaattatttcaaatcaccccagacaacatccagtttgaaagaaat
tttgatcggcagaaaagtcgcatcctgagtctcagctggcatccctctgctacccacatt
gcagctggctccatagactacattagtgtatttgatgtcaaatcaggtagcgctgttcgt
aagatgatcgtggacaggcagtacatgggtgtgtctaagcggaagtgtattgtatggggt
gtggcctttttgtccgatggcacagtcataagtgtggactctgctgggaaagtgcagttc
tgggactcagctactgggacacttgtcaagagccatctcatctcaaatgctgatgtgcag
tccattgctgtagcagaccaagaagacagttttgtggtgggcacagccgagggcacaata
ttccattttcagctggtttctgtgacttccaatagcagtgagaagcaatgggtgcggacc
aaaccattccagcaccacacacacgacgtgcgtgctgtggcccacagcccaaccgcactg
atatctggaggcactgacacccacctggttattcgtcctctcatggagaaggtggaggtg
aagaattatgatgctgctctccgaaaaatcacatttcctcatcgatgtctcatttcttgt
tcaaaaaagaagcagcttctcctcttccagtttgctcatcacttggaactttggcgactg
ggatccacagcggcaacaggcaagaatggtgatacccttccactctctaaaaatgcagat
catttactacatctcaagacaaagggccctgagaacattatttgcagctgtatctcccca
tgtggaagctggatagcctattccacagtgtctcgggtttttctctatcggctgaattat
gaacatgacaacataaacctcaaaagggtttccaaaatgcctgcgttccttcgctctgcg
cttcagattatgttttctgaagattcaaaaaagctttttgtggcatcaaatcaagggtct
ctccacatctttcagctgttggaaggaagcttcaagcacctccatactttccagcctcag
tcagggacagtggaggccatgtgtcttttggcagtcagtccagatggtaattggctagca
gcatcaggaactagtgctggagtccatgtgtacaatgtaaagcatctaaagcttcactgc
acagtgcctgcttataattttccagtgactgctctggccattgcacccattactaacaac
cttgtcatcgctcattctgaccagcaggtatttgagtacagtatcccagaaaaacagtac
acagagtggagccggaatatccagaaacaggggtttcaccatctttggcttcaaagagat
actcccatcacacacatcagttttcatcccaagagaccaatgcacatcctcctccatgat
gcctacatgttctgcatcattgataagtcgttgcctcttccaaatgacaagaccttactc
tacaatccacttcctcccacaaatgaatcagatgtcttccggaggcgcacagcccacgcc
tttaaaatttctaaaatatataagcccttactcttcatggatcttttggatgaaaggaca
cttgtggcagtagaacgacccctggatgacatcatcgctcagctcccaccacccatcaaa
aagaagaaatttggaacctag

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