Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970009
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Entry
101970009 CDS
T10664
Symbol
Utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog isoform X1
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101970009 (Utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
iti03009
]
101970009 (Utp4)
Ribosome biogenesis [BR:
iti03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101970009 (Utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WD40
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_BBS7
NBCH_WD40
Beta-prop_SPT8
Beta-prop_RSE1_2nd
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
DUF7165
PQQ_2
Motif
Other DBs
NCBI-GeneID:
101970009
NCBI-ProteinID:
XP_005318420
UniProt:
I3MQK3
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MGEFKVHRVRFFNYVPPGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
RATEALCWAEGQRLFSAGLNGEILEYDLQALNVKYALDAFGGPIWSMTASPSGSQLLVGC
EDGSVKLFQITPDNIQFERNFDRQKSRILSLSWHPSATHIAAGSIDYISVFDVKSGSAVR
KMIVDRQYMGVSKRKCIVWGVAFLSDGTVISVDSAGKVQFWDSATGTLVKSHLISNADVQ
SIAVADQEDSFVVGTAEGTIFHFQLVSVTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTAL
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRCLISCSKKKQLLLFQFAHHLELWRL
GSTAATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRVFLYRLNY
EHDNINLKRVSKMPAFLRSALQIMFSEDSKKLFVASNQGSLHIFQLLEGSFKHLHTFQPQ
SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKHLKLHCTVPAYNFPVTALAIAPITNN
LVIAHSDQQVFEYSIPEKQYTEWSRNIQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD
AYMFCIIDKSLPLPNDKTLLYNPLPPTNESDVFRRRTAHAFKISKIYKPLLFMDLLDERT
LVAVERPLDDIIAQLPPPIKKKKFGT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaatttaaggtccatcgagtacgtttctttaattatgtaccaccagggatccgt
tgtgtggcttacaataaccagtcaaacagattggctgtttcacgaacagatggcactgtg
gaaatttataacttgtcagcaaactactttcaagagaaatttttcccaggtcatgagtct
cgagctacagaagctctgtgttgggcagaaggacagcgactttttagtgctggactcaat
ggagaaatccttgagtatgacttacaggcattaaatgtcaagtatgccttggatgccttt
ggaggacctatttggagtatgactgccagccccagtggctctcaacttttggttggctgt
gaagatggatctgtgaaattatttcaaatcaccccagacaacatccagtttgaaagaaat
tttgatcggcagaaaagtcgcatcctgagtctcagctggcatccctctgctacccacatt
gcagctggctccatagactacattagtgtatttgatgtcaaatcaggtagcgctgttcgt
aagatgatcgtggacaggcagtacatgggtgtgtctaagcggaagtgtattgtatggggt
gtggcctttttgtccgatggcacagtcataagtgtggactctgctgggaaagtgcagttc
tgggactcagctactgggacacttgtcaagagccatctcatctcaaatgctgatgtgcag
tccattgctgtagcagaccaagaagacagttttgtggtgggcacagccgagggcacaata
ttccattttcagctggtttctgtgacttccaatagcagtgagaagcaatgggtgcggacc
aaaccattccagcaccacacacacgacgtgcgtgctgtggcccacagcccaaccgcactg
atatctggaggcactgacacccacctggttattcgtcctctcatggagaaggtggaggtg
aagaattatgatgctgctctccgaaaaatcacatttcctcatcgatgtctcatttcttgt
tcaaaaaagaagcagcttctcctcttccagtttgctcatcacttggaactttggcgactg
ggatccacagcggcaacaggcaagaatggtgatacccttccactctctaaaaatgcagat
catttactacatctcaagacaaagggccctgagaacattatttgcagctgtatctcccca
tgtggaagctggatagcctattccacagtgtctcgggtttttctctatcggctgaattat
gaacatgacaacataaacctcaaaagggtttccaaaatgcctgcgttccttcgctctgcg
cttcagattatgttttctgaagattcaaaaaagctttttgtggcatcaaatcaagggtct
ctccacatctttcagctgttggaaggaagcttcaagcacctccatactttccagcctcag
tcagggacagtggaggccatgtgtcttttggcagtcagtccagatggtaattggctagca
gcatcaggaactagtgctggagtccatgtgtacaatgtaaagcatctaaagcttcactgc
acagtgcctgcttataattttccagtgactgctctggccattgcacccattactaacaac
cttgtcatcgctcattctgaccagcaggtatttgagtacagtatcccagaaaaacagtac
acagagtggagccggaatatccagaaacaggggtttcaccatctttggcttcaaagagat
actcccatcacacacatcagttttcatcccaagagaccaatgcacatcctcctccatgat
gcctacatgttctgcatcattgataagtcgttgcctcttccaaatgacaagaccttactc
tacaatccacttcctcccacaaatgaatcagatgtcttccggaggcgcacagcccacgcc
tttaaaatttctaaaatatataagcccttactcttcatggatcttttggatgaaaggaca
cttgtggcagtagaacgacccctggatgacatcatcgctcagctcccaccacccatcaaa
aagaagaaatttggaacctag
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