Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970019
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Entry
101970019 CDS
T10664
Symbol
Smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A isoform X4
KO
K06636
structural maintenance of chromosome 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04110
Cell cycle
iti04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
101970019 (Smc1a)
04114 Oocyte meiosis
101970019 (Smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
iti03036
]
101970019 (Smc1a)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
101970019 (Smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
101970019 (Smc1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
101970019
NCBI-ProteinID:
XP_005339827
UniProt:
I3M666
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Position
X
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AA seq
1233 aa
AA seq
DB search
MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKT
LRDLIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDKRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNK
ELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEESQS
QGRDLTLEENQVKKYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAKRRIDEINKELNQV
MEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRY
EPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEF
CREIGVRNIREFEEEKVKRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQ
TVKKDENEIEKLKKEEQRHMKIIDETMAQLQDLKNQHLAKKSEVNDKNHEMEEIRKKLGG
ANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGSSQGE
ESVSGSQRTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLNEQQSVLQRI
AAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESL
IGVYPEQGDCVISKVLTFDLTKYPDANPNPNEQ
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcctgaaactgattgagatcgagaactttaaatcgtacaagggtcgacagatt
atcggaccatttcagaggttcaccgccatcattggacccaatggctctggtaagtcaaat
ctcatggatgctatcagctttgtgctaggtgaaaaaaccagcaacctgagggtaaagacc
ctgcgggacctgatccatggagcacctgtgggcaaaccagctgccaaccgggcctttgtc
agcatggtctactctgaggagggtgctgaggatcgcacctttgctcgtgtcattgtagga
ggttcttctgaatacaagatcaacaacaaagtggtccagctacatgagtacagtgaggaa
ttagagaaattgggcattctcatcaaagctcgtaacttcctcgtctttcagggtgctgtg
gaatctattgccatgaagaaccccaaagagaggacagctctatttgaagagatcagtcgc
tctggggagctggcccaggagtatgataagcgaaagaaggaaatggtgaaggctgaagag
gacacacaatttaattaccatcgcaagaaaaacattgcggctgaacgcaaggaggccaaa
caggaaaaagaagaggcggaccgctaccagcgcctgaaagatgaggtggtacgagcccag
gtacagctgcaactctttaagctttaccataatgaagtagaaatcgagaaactcaacaag
gaactggcatcaaagaacaaagagattgagaaagacaagaagcgaatggacaaggtagag
gatgagctgaaggagaagaagaaggagcttggcaaaatgatgcgggagcagcagcagatc
gagaaagagatcaaggagaaggactcggagctgaatcagaagcgacctcagtacatcaaa
gccaaggagaatacctcccacaaaatcaagaagctggaagcagctaagaagtctctgcag
aatgctcagaagcactataaaaagcgtaaaggtgacatggatgaactggagaaggagatg
ctgtctgtggagaaggcccggcaggagtttgaagaacggatggaagaagagagtcagagt
cagggcagagacttgaccctggaggagaatcaggtaaagaaataccaccggctgaaagaa
gaagccagcaagagagcagctactttagcccaggagctggagaagttcaatagagaccag
aaagctgaccaggaccgtttggatctggaagagcggaagaaagtagaaacagaggccaag
atcaagcaaaagctgcgggagattgaagagaatcagaagcggatcgagaagctggaggaa
tacatcactactagcaagcaatccctagaggagcagaagaaactagagggagaactgact
gaggaggtggagatggccaagaggcgaatagatgagatcaataaggagctgaaccaggtg
atggagcagttgggggatgcacgcatagaccgccaggagagcagccgtcagcagcgaaag
gcagagataatggaaagcatcaagcgcctttaccctggctctgtgtatggccgcctcatt
gacctctgccagcccacacaaaagaagtatcagattgctgtgaccaaggttttgggcaag
aacatggatgccattattgtagactcagaaaagacaggccgggattgtattcagtatatc
aaggaacagcgtggggagccagagaccttcttgcctcttgactacctggaggtgaaacct
acagatgaaaaactccgggaactgaaaggggccaagctagtgattgatgtgattcgctat
gagccacctcacatcaaaaaagccctgcagtatgcttgtggcaatgcccttgtctgtgac
aatgtagaagatgcccgccgcattgcctttggaggccatcagcgtcacaagacagttgca
ctggatgggaccctgttccagaagtcaggagtcatctctggtggagccagtgacctgaaa
gcgaaggcacggcgctgggatgagaaagcagtagacaagttgaaagagaagaaggagcgg
ttgacagaggagctgaaagagcaaatgaaggcaaagcggaaagaggcagagctgcgtcag
gtgcagtctcaggcccatggattgcagatgcgactcaagtactcacagagcgacctagaa
cagaccaagacacgacatctggcactaaatctccaggaaaagtccaagctggagagtgag
ctggccaacttcgggcctcgaattaatgatatcaagaggattattcagagccgagagagg
gaaatgaaagacttgaaagagaagatgaaccaggtagaggatgaggtatttgaagaattt
tgtcgagagattggtgtccgcaacatccgagaatttgaggaagagaaggtgaagcgacag
aatgaaattgccaagaagcgtttggagttcgaaaatcagaagactcgcttgggcatccag
ttggattttgaaaagaaccaactgaaggaagaccaggataaagtacacatgtgggaacag
acagtaaaaaaggatgaaaatgagatagaaaaactcaagaaggaagaacaaagacatatg
aagatcatagatgagaccatggcccagctacaagacctgaagaatcagcacctggctaag
aagtcagaagtgaatgacaagaatcacgagatggaggaaattcggaagaaacttgggggc
gccaacaaggaaatgactcatttacagaaggaggtaacagccattgagaccaaacttgaa
cagaagcgcagtgatcgccacaatttgctacaggcttgcaagatgcaagacatcaagttg
ccgctgtcaaagggtactatggatgatattagtcaggaagagggtagctcccaaggggag
gaatcagtgagtggttcccagagaacttccagtatctatgctcgagaagccctcattgaa
atcgactacggtgacctgtgtgaggatctgaaggatgcccaggctgaggaggaaatcaag
caggaaatgaacacactgcagcagaaactgaatgagcagcagagtgtgcttcagcgaatt
gctgcccccaacatgaaggccatggaaaagctggaaagtgtccgagacaagttccaggag
acctcagatgaatttgaggcagcccgaaagcgagcaaagaaggccaaacaggcttttgaa
cagattaagaaggagcgctttgaccgtttcaatgcttgttttgaatctgtggctactaac
attgatgagatctacaaggctctgtctcgtaacagcagtgcccaggcattcttgggccct
gagaaccctgaggagccctacttggatggtatcaactacaactgtgtagctcctggcaaa
cgcttccggcctatggataacttgtcagggggggagaagacagtggcagctctggccctg
ctgtttgccatccacagctacaagccagcccccttcttcgtcctggatgagatcgatgct
gccttggataacaccaacattggcaaggtggcaaattatatcaaggagcagtcgacttgc
aacttccaggccatcgtcatctctctcaaggaggagttctacaccaaggctgagagcctc
attggagtctatcctgagcaaggggactgtgtgatcagcaaagtcctgaccttcgacctc
accaagtacccagatgccaaccccaaccccaatgagcagtag
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