Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970146
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Entry
101970146 CDS
T10664
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03020
RNA polymerase
iti03420
Nucleotide excision repair
iti05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101970146
09124 Replication and repair
03420 Nucleotide excision repair
101970146
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101970146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iti03021
]
101970146
03400 DNA repair and recombination proteins [BR:
iti03400
]
101970146
Enzymes [BR:
iti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101970146
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101970146
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101970146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_6
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
SipA
Motif
Other DBs
NCBI-GeneID:
101970146
NCBI-ProteinID:
XP_040143215
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MYDADENMQYDEDDDEITPDLWQEACWIVIXPRYLLKFEQIYLSKPTHWKRDGAPSPMMP
NEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDHN
LCELNECPLDPGGYFIINGAEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSFR
PTSTIWVSMLARRGQGAKKSAIGQRILATLPYIKQEVPIIIVFRALGFVSDRDILEHIIY
DFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGITKEKIIKYAKEVLQKEMLPH
AGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRGHYGNKRLDLAGPLLAFLFRGMFKN
LLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWDDQKKAHQARAGVSRVL
NHLAFASTLSHLHRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA
YISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIQKDPEQLMNSLRKL
RRQMDIIVSEVSMIRDIREREIQIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNN
YSWQNLVASRVAEYIDTLEEETVMLAMTSDDLQEKEVAYCSTYTHCEIHPSMILGVCASI
IPFPDHNQSPRNTYQSATGKQAMGVYITNFHVRMDTLAHVFYYPQKPLVTTRSMEYLRFR
ELPAGINSIVAIASYAGYIQEDSVIMNRSAVD
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcagacgagaatatgcaatatgatgaggatgatgatgaaatcaccccagat
ttatggcaagaagcatgctggattgtaatcnagccaaggtatttgttaaaatttgaacaa
atttacctctccaagcctacccattggaaaagagatggtgctccttcaccaatgatgcca
aatgaggccagattaagaaatctcacgtattctgctccactttatgttgacataacaaaa
acagtcattaaagaaggtgaagaacaacttcagactcagcatcagaaaacttttatagga
aaaattccaattatgttgcgttcaacttactgcctattgaatggcttaacagatcataat
ctttgtgagttaaatgaatgccctttggatcctggtggctattttattattaatggagct
gaaaaggttctgattgcccaagagaaaatggcaacaaacacagtttatgtgtttgccaaa
aaggattctaaatatgcctacacaggagagtgtaggtcatgtctggagaattctttccga
cctaccagtactatatgggttagcatgctggcaagaagagggcagggtgcaaaaaagagt
gctattggtcagcgcatcttggcaactctaccatatatcaagcaagaagttcccatcatt
attgtgtttagagcattaggttttgtgtctgatagagatatcctagaacatattatttat
gattttgaagatccagaaatgatggaaatggttaaaccttcacttgatgaagcttttgtc
attcaagaacaaaatgttgcattaaatttcattggttcaagaggagcaaagcctggcatt
actaaagagaaaataattaagtatgcaaaagaagttttacaaaaagaaatgcttcctcat
gctggtgttagtgatttttgtgagaccaaaaaagcatatttcttgggatatatggttcat
aggttacttctggcagctttgggtagaagagaactagatgacagaggtcactatggaaac
aaaagattggatcttgctgggccactacttgcattcttatttagaggtatgtttaagaat
ttactaaaagaagtacgaatctatgcacaaaagtttattgatcgaggaaaggactttaac
ttggagttggctattaaaacgcggataatatctgatggcttaaaatattctttagctact
ggaaactgggatgaccaaaagaaagctcatcaagccagagctggagtatctcgggtatta
aaccacctggcttttgcatctactctttctcatctgcaccgtttaaattctcctattggt
agagatggcaagctagcaaaaccaagacagttgcataatacattgtggggaatggtttgt
cctgctgagactccagagggccatgctgtaggacttgtgaagaatttagcactgatggct
tatatttcagttggatctcaaccttctccaattctggaatttttagaagaatggagtatg
gaaaatttagaagaaatttctcctgcagctattgctgatgcgactaagatttttgttaat
ggctgctgggttggaatacagaaagatcctgaacaacttatgaacagcctaaggaaatta
cggcgtcagatggacatcattgtgtctgaagtttctatgatcagagatattcgagagagg
gagattcagatctataccgatgcaggccgtatttgtagaccacttctgattgtggaaaaa
caaaagctacttttaaagaagagacatattgaccaattgaaagagagagaatataacaac
tacagttggcagaatcttgtggccagcagggtagcagaatatatagatactctagaagaa
gaaacagtgatgcttgcaatgacctcagatgatttacaggagaaagaagttgcttattgt
tccacatatactcattgtgagattcatccatcaatgattcttggtgtttgtgcatctatt
attccctttcctgaccataaccaatcccctagaaacacataccagtctgctacgggtaag
caggctatgggagtgtatatcaccaacttccatgtacgtatggacacattggcccatgtt
ttttattatcctcaaaaaccacttgtgactacacggtctatggaatatcttcgatttaga
gagttgccagcaggtatcaactcaattgtggccattgcatcatacgctggatatattcaa
gaagactctgttatcatgaatcgttcagctgtagactga
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integrated database retrieval system
