Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970387
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Entry
101970387 CDS
T10664
Symbol
Ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
iti04990
]
101970387 (Ptchd1)
Domain-containing proteins not elsewhere classified [BR:
iti04990
]
Other domain-containing proteins
Patched domain-containing proteins
101970387 (Ptchd1)
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
101970387
NCBI-ProteinID:
XP_005334866
UniProt:
I3MUW1
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All DBs
Position
X
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AA seq
888 aa
AA seq
DB search
MLRQVLHRGLRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQH
SLAKIERNLVNSLFPVNRSKHRLYSDLQTPGRYGRVIVTSFQKANMLDQHHTDLILKLHA
AVTKIQVPRPGFNYTFAHICILNNDKTCIVDDIVHVLEELKNARATNRTNFAITYPITHL
KDGRAVYNGHQLGGVTVHSKDRVKSAEAIQLTYYLQSINSLNDMVAERWESSFCDTVKLF
QKYNSKVKMYPYTSSSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDCVRSKPWLG
LLGLVTISLATLTAAGIINLTGGKYNSTFLGVPFVMLGHGLYGTFEMLSSWRKTREDQHV
KERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSF
YGSSLVFTGYIENNYQHSIFCRKVPKPEVLQEKPAWYRFLLTARFSEETAEGEEANTYES
HLLVCFLKRYYCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIE
YTTAQQKYFSNYSPVIGFYIYESIEYWNTSVQEDVLEYTKGFVRISWFESYLNYLRKLNV
STGLTKKNFTDMLRNSFLKAPQFSHFQEDIIFSKKYNDEVDVVASRMFLVAKTMETNREE
LYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYASSLGAPLHNSCISALFLLFFSAFLVAD
SLINVWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPLLSTFVLGKD
FTRTKWVKNALEIHGVAILQSYLCYIVGLIPLAAVPSNLTCTLFRCLFLIAFVTFFHCFA
ILPVILTFLPPSKKKRKEKKNPENREEIECVEMVDIDSTRVVDQITTV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgctgcggcaggttctgcacaggggcttgaggacgtgtttctcccggctcggccacttc
attgccagtcacccggtcttcttcgcctcggcgccggtgctcatctccatcctgctcggc
gccagcttcagccgctaccaggtcgaagaaagcgtggagcacctgctggcgccccagcac
agcctagccaagatcgagcgcaacctcgtcaacagcctcttcccggtcaaccgctccaag
caccggctctactcggacctgcagacccctgggcgctacggccgggtcatcgtcacctcc
ttccagaaagccaacatgctggaccagcatcacaccgacctgatcttaaagttgcatgct
gctgtgaccaagatccaggttccaaggcctggttttaattacacgtttgcccacatatgt
atcctgaataacgataagacttgcatcgtggatgacatagtacacgtcctggaagagtta
aagaatgctcgggctacaaatcggaccaattttgctatcacatacccgatcacccactta
aaggacggtagggccgtatacaatggacaccagcttgggggcgtcactgtgcacagcaag
gatcgggtgaaatctgcagaggctattcagctcacctactacctgcagtcaatcaacagt
ctcaatgacatggtggctgagaggtgggagtccagcttctgtgacactgtcaaactgttc
cagaaatacaacagtaaagtcaaaatgtacccttacacatcctcgtcactgagggaagat
ttccagaagaccagccgtgtgtcagaacgttacctggtcaccagcctgatcctggtagtc
accatggccatcctctgctgctctatgcaggactgcgtccgcagcaaaccctggctaggc
ctgcttgggttggtaaccataagcctagccactctcactgcagctgggatcatcaatctt
actggtgggaaatacaattccaccttcctgggagtccctttcgtcatgctaggtcatgga
ctatatgggacttttgaaatgttatcctcctggaggaaaactagagaagaccaacatgtt
aaggagcgaactgcagcagtctatgcagactccatgctctccttttctctcaccactgcc
atgtacttggtcacctttggcataggggccagtcctttcacaaacattgaggcagccagg
attttctgctgcaattcctgtattgcaatcttcttcaactacctctatgtactctcgttt
tatggttccagcctggtgttcactggctacatagaaaacaattaccagcatagtatcttc
tgtagaaaagtcccaaagcctgaggtattgcaggagaagccggcatggtacaggttcctc
ctgacagccagattcagtgaagaaacagctgaaggagaggaagcgaacacttacgagagt
cacctattggtatgtttcctcaaacgctattactgtgactggataaccaacacctatgtc
aagccttttgtagttctcttttaccttatttatatttcctttgccttaatgggctatctg
caggtcagcgaagggtcagaccttagtaacatcgtagcaactgcgacacaaaccattgag
tatactactgcccagcaaaagtactttagcaactacagtcctgtgattgggttttacata
tatgagtccatagaatactggaacactagtgtccaagaagacgttctagaatataccaag
gggtttgtgcggatatcctggtttgaaagctacttaaattaccttcggaaactcaatgta
tccactggcttgactaagaaaaatttcacagacatgttgaggaattccttcttgaaagcc
ccccaattttcgcattttcaagaggacatcatcttctctaaaaagtacaatgatgaagtt
gatgttgtggcctccagaatgtttttggtggccaagaccatggaaaccaacagagaagaa
ctctatgatctcttggagaccctgaggagactttccgtcacctccaaagtgaagttcatc
gtctttaatccatcttttgtgtacatggatcgatatgcctcctctctgggagcccccctg
cacaactcctgcatcagtgctttgttcctgctcttcttctcggcattcctggtggcagat
tctctgattaatgtctggataactctaacggttgtgtctgtggagtttggagtgataggt
ttcatgacattatggaaagtagaactggactgcatttccgtgctatgcttaatctatgga
attaactacacaattgacaattgtgctccactgttatccacatttgttctgggcaaggat
ttcacaagaactaaatgggtaaaaaatgccctagaaatacatggggtagctattttacag
agttacctctgctatattgttggtctgattcctcttgcagctgtgccttcaaatctgacc
tgtacactgttcaggtgcttgtttttaatagcatttgtcaccttctttcactgctttgcc
attttacctgtgatactgactttcctgccaccctctaagaaaaaaaggaaagagaagaaa
aatcctgaaaaccgggaggaaattgagtgtgtagaaatggtggatatcgatagtacccga
gtggttgaccaaattacaacagtgtga
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