Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101970507
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Entry
101970507 CDS
T10664
Symbol
Vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A isoform X1
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03250
Viral life cycle - HIV-1
iti03272
Virion - Hepatitis viruses
iti04144
Endocytosis
iti04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101970507 (Vps4a)
03272 Virion - Hepatitis viruses
101970507 (Vps4a)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101970507 (Vps4a)
09143 Cell growth and death
04217 Necroptosis
101970507 (Vps4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101970507 (Vps4a)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101970507 (Vps4a)
Membrane trafficking [BR:
iti04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
101970507 (Vps4a)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
Check point factors
Other check point factors
101970507 (Vps4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
TIP49
AAA_16
AAA_22
AAA_14
AAA_5
RuvB_N
AAA_25
AAA_17
IstB_IS21
DUF815
AAA_2
AAA_18
NPHP3_N
AAA_33
nSTAND3
RNA_helicase
AAA_24
PhoH
ResIII
AAA_7
Mg_chelatase
AAA_28
NACHT
Parvo_NS1
bpMoxR
YhdB
AAA_30
Motif
Other DBs
NCBI-GeneID:
101970507
NCBI-ProteinID:
XP_005318422
UniProt:
I3MJX2
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
VQYLDRAEKLKDYLRNKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSIVIDDLLTPCSPGDPGAIEMTWMEVPSDKLLEPVVSMSDMLRSLATTRPTVNA
DDLLKVKKFSEDFGQES
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcaaccctccagaaagccattgatctggtgacaaaagccacagaagaggat
aaagccaagaactacgaggaggcactccggctctaccagcatgctgtggagtacttcctc
cacgctatcaagtatgaggcacacagtgacaaagccaaggagagcattcgagccaagtgc
gtgcagtacctagaccgggcagagaagctgaaggattatttacgaaacaaagagaaacac
ggcaagaagccagtcaaagagaatcaaagtgagggcaagggcagtgatagtgacagtgaa
ggggataatccagagaaaaagaaattgcaagaacaactgatgggtgctgttgtgatggag
aaacccaacatacgatggaatgacgtggctgggctggagggggccaaggaggctctcaaa
gaagctgtcattttgccaattaaattcccacacttgttcacaggcaagcgtaccccttgg
cgagggatactgctttttggaccccctggcacagggaaatcctatctggccaaggctgtg
gcaacagaggccaacaactctaccttcttctctgtgtcctcctcagatttgatgtctaag
tggttgggggagagtgagaagctagtcaagaatctctttgagctagccaggcaacacaag
ccctccatcatcttcatcgatgaggtggattctctctgtgggtcccggaatgaaaatgag
agcgaggctgcccgaaggatcaaaacagagttcttggtccaaatgcagggggtggggaat
aacaatgatgggactctggttctcggtgccacaaacatcccctgggtgttggattcagct
attagaaggaggtttgaaaagcgcatttatatcccactgccagaagaagctgcccgtgcc
cagatgttccgattgcatcttgggagcactccacacaacctcacagatgccaacatccat
gagctggcccggaagacagaaggctactcaggtgcagacatcagcatcattgtgagggac
tcccttatgcagcctgtcaggaaagtgcagtcagcaacacacttcaagaaggtctgtggt
ccttcccgcaccaaccctagcattgtgattgatgacctcctgaccccatgctctccaggg
gacccaggggccatagagatgacttggatggaggttcctagtgacaaactcttagagcct
gtggtttccatgtcggacatgctccggtctttggccaccacccggcccacagtgaatgca
gatgacctcctgaaagtgaagaaattctcagaggactttggacaggagagttaa
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