Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101971062
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Entry
101971062 CDS
T10664
Symbol
Pabpc5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03015
mRNA surveillance pathway
iti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101971062 (Pabpc5)
09123 Folding, sorting and degradation
03018 RNA degradation
101971062 (Pabpc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101971062 (Pabpc5)
03041 Spliceosome [BR:
iti03041
]
101971062 (Pabpc5)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101971062 (Pabpc5)
mRNA cycle factors
Stress granule specific factors
101971062 (Pabpc5)
Spliceosome [BR:
iti03041
]
Complex C
Other components
Complex C specific factors
101971062 (Pabpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
101971062
NCBI-ProteinID:
XP_005335906
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All DBs
Position
X:71870352..71877674
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AA seq
386 aa
AA seq
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MLREMGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTR
SPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKS
IDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY
VGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASG
KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK
SRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATK
AVDEMNGRVVGSKPLHVTLGQARRRW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgctaagagagatggggagcggggagcctaatcctgctggcaagaaaaagaagtacctc
aaggccgccctgtacgtgggtgatttggaccctgatgtcactgaggacatgctctataag
aagttcaggcccgctggccctctgcgtttcacccgaatctgccgtgacccagtgacccgc
agccccctgggctatggctatgttaacttccgctttccagcggatgctgaatgggccctg
aacaccatgaattttgatttgattaatggcaaaccattccgcctcatgtggtcacagcca
gatgaccgcttaagaaagtctggtgttggaaatatattcatcaaaaacctggataaatca
attgacaatagggccctgttctatttgttttcagcttttgggaacattctctcctgcaaa
gttgtatgtgatgacaatggctctaagggttatgcctatgtgcattttgacagcctggcc
gctgccaatagggccatctggcacatgaatggagttcggctgaacaatcgccaggtatac
gttggtagattcaaattcccagaagagcgtgcagctgaagtcagaaccagggatagagca
acattcactaatgtttttgttaaaaactttggagatgacatggatgacgaaaaactgaag
gaacttttcagtgaatatgggccaactgagagtgtaaaggtaataagagatgccagtggg
aaatctaaaggctttgggtttgtaaggtatgagacacacgaggctgcccaaaaggctgtg
ctagacctgcatggaaagtcaattgatgggaaagtcctgtatgtagggcgagcacagaag
aaaattgaacgcctagctgagttaaggcggagatttgaacggctaagattaaaagaaaaa
agtcgacctccgggggtgcctatctatattaaaaacctggatgagaccatcgatgatgaa
aaactgaaggaggaattttcttcatttggatcaattagcagagccaaagtgatgatggaa
gtagggcaaggcaaaggttttggtgttgtttgcttttcttcttttgaagaggctaccaaa
gcagtggatgagatgaatggtcgagtagtgggctccaagcccctgcatgtcaccctgggc
caggccaggcgcaggtggtga
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