KEGG   Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101971207
Entry
101971207         CDS       T10664                                 
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
iti  Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03015  mRNA surveillance pathway
Brite
Transcription machinery [BR:iti03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     101971207 (Pcf11)
Messenger RNA biogenesis [BR:iti03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     101971207 (Pcf11)
SSDB
Other DBs
NCBI-GeneID: 101971207
NCBI-ProteinID: XP_005323314
LinkDB
Position
Unknown
AA seq 1553 aa
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKNRPCPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKVSHTKDLKNQESESVRLSDMNKRDPRLKKHLQDKTDGKDDDV
KEKRKTVEKKDKDEHMKSSEHRLIGSRNKIINGIVQKQDTITEELEKQGIKPGRSSNRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGIKQSHMEEFTPPSR
EERNAKRSTKQDVRDPRRMKKTEEERPQETANQHSTKSGSEPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTVAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIFEGPNKLSPRI
DGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPMGGLRFEGPHGQPVG
GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPH
GQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI
EGPLGQGGPRFEGHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQ
QVQPRFDGIPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESFNQTGPYNDPPGSAF
NAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSTPLNRASGHYFDEKNLQSSQFGNF
GNLPAPLSVGNIQASQQVMTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDN
HLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQNEDQDVPDLTNFT
IEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHR
RWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVES
CEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENP
LNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTENDTVESV
NT seq 4662 nt   +upstreamnt  +downstreamnt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccctaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataaatcgcctgaggagccttcaacacctggcacagtggtc
agttcccccagcatctctactcctccaattgttcctgatatacaaaagaatcttactcaa
gaacaactaataaggcagcagttactggcaaagcaaaaacagttgttagaacttcaacag
aaaaagctggagcttgagttagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttgggtcctggatcagcaccatccaagttacatgtttcacag
attccccctatggcagttaaagccccccatcaggttcctgtgcaacctgagaaaaaccgt
ccatgtccatccttacaaattcaggatttgaaaggaacaaaccgggatcctcgtcttaac
aggatgagccaacattcttctcatggaaaagatcagagtcacaggaaggaattcctaatg
aacacattgaaccagtctgatattaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctctgaaaaacaaagtatct
cacacgaaagacttgaaaaatcaagaatctgaaagtgtgagattatcagatatgaacaag
agagatccaagattaaaaaaacatcttcaagataagactgatggcaaagatgatgatgtg
aaagagaagagaaaaacagtagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactgattggaagtagaaataaaatcataaatggcattgtacagaaacaggataca
ataacagaagaattggaaaaacaggggataaaaccagggagatcgagtaatagaaagcgt
tcacgatcaagatcacccaagtcccggtcaccaattatacattccccaaagagaagagat
aggcggtcacccaaacgaaggcagagaagtatgtctccaacttcaacacctaaagctggt
aagattcgtcaatctggaattaagcagtcacatatggaagaatttacaccaccttccagg
gaagaaagaaatgctaagagaagtactaaacaggatgttcgagatccaaggcgaatgaaa
aagactgaagaggaacgaccacaagaaactgcaaatcaacattctacaaagtcaggctct
gagccaaaggagaatatagaaaattggcaaagttctaagtctgccaaaagatggaaatct
ggttgggaagaaaataaaagtttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactgttgcaagc
aaaagagaattgcttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctttttcagtatcaagaaggtgttcga
gaagagcagagatctccattcaatgatcgttttccacttaagcgacctagatatgaagat
tcagataaaccatttgtagatagcccagcatcaagatttgctggccttgatacaaatcag
cggcttactgctttagctgaagacagaccattatttgatggacctagtaggccgtcagta
acaagagatggcccaaccaagatgatttttgaaggacctaataaattaagccctagaatt
gatggacctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatgggggga
ggaggccctttgagatttgaaggaccacaaggtcagttaggaggtgggtgtcctttgaga
tttgaaggtcctccaggaccagtagggacacctctgaggtttgaggggccaattggtcaa
gcaggaggaggtggttttcgatttgagggttcccccggtctaaggtttgagggatctgca
ggtggtttgcgatttgaaggaccagggggtcagcctgtgggtggtctcagatttgaagga
catcgtggtcaacctatgggtggtctgaggtttgagggacctcatggtcagcctgtgggt
ggtcttagatttgataatccccgtggtcaacctgtaggtggacttagatttgaggggggt
catggtccatcaggagctgccattagatttgatggacctcatggtcagccaggaggtggg
atcagatttgaggggcctttgctacagcaaggagttggaatgaggtttgagggcccccat
ggtcagtcagtagctggtctgagatttgaaggacaacataatcagcttggtggaaacctc
agatttgagggtccacatggtcaaccaggggttggaatcaggtttgaaggacctttagtc
cagcaaggtggtggaatgaggtttgagggtccttcggtaccaggaggtggcttgagaatt
gaagggcctctgggtcaaggtggtccaagatttgaaggtcatgctttaaggtttgatggt
cagccaggtcagccatcactcttgccaagatttgatggattgcatggtcagccaggtcct
agatttgaaagaactcctggtcagccaggcccacagaggtttgatggaccacctggacag
caggttcaaccaagatttgatggtatacctcaaagatttgatggtccacaacaccagcaa
gcatcaaggtttgatattcctcttggtctacaaggcacacgatttgacaatcatccttca
caaaggcttgaatctttcaatcagactggtccatataatgatccacctggtagtgctttt
aatgccccatcccaaggactacaattccaaagacatgaacaaatgtttgattcacctcaa
ggaccaaattttaatggaccacatggccctggaaaccagagtttctcaactccccttaac
agagcttctggacactattttgatgaaaagaatcttcagagttctcaatttggaaacttt
ggcaatttacctgcaccattatcagtaggaaatattcaggcatctcaacaggttatgact
ggtgttgctcagccagtagcatttggccaaggacaacaatttttaccagttcatccacaa
aatcctggagcatttgttcagaatccttcaggtgctcttcctaaggcatatcctgataat
catctcagtcaggtggatgttaatgaattattttcaaaactgctaaaaacaggaattctc
aaattgtcccagcctgattcagctacaacacaagtaaacgaagttgctgctcagcctccc
cctgaagaagaagaagatcaaaatgaagatcaagatgttccagatctcactaattttaca
attgaagaattgaaacaacgttatgacagtgttataaaccgactgtacactggtattcag
tgttactcttgtggaatgaggtttacaacatcacagacagatgtatatgcagatcacttg
gactggcactatcggcaaaatagaactgagaaggatgttagtagaaaagtcactcataga
cgttggtactacagtttaacggactggatagaatttgaggaaatagctgatctggaagaa
cgtgcaaagagccagttttttgaaaaggtgcatgaagaagttgtgctcaaaactcaggag
gctgctaaagaaaaggaatttcaaagtgtacctgctggaccagctggagcagttgagagt
tgtgaaatctgtcaagaacagtttgaacaatactgggatgaagaagaggaggaatggcac
ttaaaaaatgctatcagagtagatggaaagatatatcatccatcatgttatgaagattat
caaaatacatcttcatttgattgtacaccgtctcccagtaagacaccagttgaaaaccct
ttgaacattatgttgaacattgtaaaaaatgaattgcaagaaccttgtgaaagtcccaaa
gttaaggaagagcgaattgatactccaccagcttgtacagaggagagcatagcaacacct
actgaaattaaaacagaaaatgatacagttgagtcagtttaa

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