Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101971256
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Entry
101971256 CDS
T10664
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1 isoform X6
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03082
ATP-dependent chromatin remodeling
iti04714
Thermogenesis
iti05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101971256 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101971256 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101971256 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iti03021
]
101971256 (Smarca4)
03036 Chromosome and associated proteins [BR:
iti03036
]
101971256 (Smarca4)
Transcription machinery [BR:
iti03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101971256 (Smarca4)
Chromosome and associated proteins [BR:
iti03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
101971256 (Smarca4)
Chromatin remodeling factors
BAF complex
101971256 (Smarca4)
PBAF complex
101971256 (Smarca4)
GBAF(ncBAF) complex
101971256 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Htt_C-HEAT
Motif
Other DBs
NCBI-GeneID:
101971256
NCBI-ProteinID:
XP_005336211
LinkDB
All DBs
Position
Unknown
AA seq
1647 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
PSPLGSSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQTRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSLSDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
RAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccaccactgggtggaactcctcggccgggcccttcccctggccca
ggcccctcacctggagccatgctgggccccagcccaggcccctcaccaggctctgcccac
agcatgatggggcccagcccggggcctccctcagcaggacaccccatccctacccaaggg
cctggggggtaccctcaggacaacatgcaccagatgcacaagcctatggagtccatgcat
gagaagggcatgtcggacgacccacgctacaaccagatgaaaggaatggggatgcggtca
gggggccacgcagggatggggcccccacccagccccatggaccagcactcccaaggttac
ccctcacccttgggcagctctgagcatgcttccagtccagttccagccagtggcccatcc
tctggtccccaaatgtcatctgggccaggaggggccccactagatggtgctgacccccag
gccttggggcagcagacccggggcccaaccccatttaaccagaaccagctgcaccagctt
cgagctcagataatggcctacaagatgctggccagggggcaacctcttcctgaccacctg
caaatggctgtgcagggaaagcggccaatgcctgggatgcaacagcagatgccaacacta
cctccgccctctgtgtctgccacaggacctggccctggccctgggcctggccctggccca
ggtccaggaccagcacctccaaattacagcaggcctcatggtatgggagggcccaacatg
ccacctccaggaccctcaggtgtgccccctgggatgcctggtcagccccctggagggcct
cccaaaccttggcctgaaggacccatggcgaatgctgctgcccccacaagcacccctcag
aaactgatccccccgcagccgacaggacgcccttcgcctgcgccacctgctgtcccgcct
gctgcttcacctgtgatgccacctcagacacagtccccagggcagccagcccagcccgca
cccttggtgccgttgcaccagaagcagagccgcatcacccccatccagaagcccaggggc
ctggaccctgtggagatcctgcaggagcgggaatacaggctgcaggctcgcattgcacat
cgaattcaggaacttgaaaatctccccgggtccctggccggggatttgagaaccaaagcg
accattgagctcaaggccctcaggctgcttaacttccagagacagctacgccaggaggtt
gtggtgtgcatgcggagggacacagccttggagacggcccttaatgccaaggcctacaag
cgcagcaagcgtcagtccctgcgagaggcccgcatcactgagaagctagagaaacagcaa
aagattgagcaggagcgcaaacgccgccagaagcaccaggaatacctcaatagcattctt
cagcatgccaaggattttaaagaatatcacagatcagtcacaggcaaaatccagaaactc
accaaggcagtagccacataccatgccaacacagagcgagagcagaagaaagaaaatgaa
cgaattgagaaggaaagaatgcggaggctcatggctgaagatgaggagggctaccgcaaa
ctcatcgaccagaagaaggacaagcgcttggcctaccttttgcagcagacagacgagtat
gtggccaacctcacagagctggtacggcagcataaggctgcccaggttgccaaggagaaa
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaagggcagacacctgcaattgga
ccggatggcgagcctctggacgagaccagccagatgagtgacctccctgtgaaagtcatc
catgtggagagtgggaagatcctcacaggcacagatgccccaaaagctgggcagttggag
gcctggcttgagatgaacccagggtatgaggtagctccaagatcagatagtgaggaaagt
ggctcggaagaagaggaggaggaggaggaggaagagcagccgcagccagcacaacctccc
accctgcctgtggaggagaagaagaagattccagacccagatagtgatgatgtctctgag
gtggatgctcggcacatcattgagaatgccaagcaagacgttgatgatgagtatggtgtg
tcccaggccctggctcgtggcctgcagtcgtactatgcagtggcccatgctgtcactgag
agagtggataaacagtcagcacttatggtcaacggtgtcctcaaacagtaccagatcaag
ggcttggagtggctggtgtccctgtacaacaacaacctgaatggcatcctggctgatgag
atgggtttggggaaaaccatccagactattgcgctcatcacatacctcatggagcacaag
cgcatcaatgggcccttcctcatcatagtgcctctctcgacactgtcaaactgggcatac
gaatttgacaagtgggcaccctctgtggtaaaggtgtcctacaagggctctccagcagca
agacgggcttttgtcccccagctccgcagtgggaagttcaatgtcttgctgacaacctat
gagtacatcatcaaagacaagcacatcctagccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaagaaccaccactgtaagctgacacaggtcctcaacacgcac
tacgtggcccctcggcgtctgctgctgacgggcacgccactgcagaacaagctccccgag
ctctgggcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcacttttgaa
cagtggttcaatgctccctttgccatgaccggggaaaaggtggacctgaatgaggaagaa
accatccttatcattcgtcgtctccacaaagtgctgcgacccttcctgctccggcggctc
aagaaggaagttgaggcccagttgcctgagaaggtggagtatgtcatcaagtgcgacatg
tctgctctgcagcgcgtgctctaccggcacatgcaagctaagggggtgctactgaccgac
ggctccgagaaggacaagaagggcaaaggtggcaccaagaccctgatgaacaccatcatg
cagctgaggaagatctgcaaccacccgtacatgttccagcacattgaggaatccttttct
gagcacttgggcttcaccggtggcatcgtccagggactggacctgtacagagcctcgggg
aagtttgagcttcttgatagaattcttcccaaactgcgtgcaaccaaccataaagtgctg
ctcttctgccaaatgacttccctcatgacgatcatggaagattattttgcatatcgtggc
tttaaatacctcaggcttgatggaaccacaaaggcagaggaccggggtatgctgctgaaa
accttcaacgagcccggctcagagtatttcatcttcctgctgagcacccgggctgggggg
ctgggactgaacctccaatcagctgacactgtgatcattttcgacagcgactggaatccc
caccaggacctgcaagcgcaggaccgagcccaccgcatcgggcagcagaatgaggtacgc
gtgctccgcctctgcacggtcaacagcgtggaggagaagatcctggctgcagccaagtat
aagctcaatgtggaccagaaggtgatccaggcgggcatgttcgaccagaaatcatccagc
cacgaaaggcgcgcgttcctgcaggccatcttggagcacgaggagcaggatgagagcaga
cactgcagcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggc
gtcaaccccgacttggaggagccacctctaaaggaagaagatgaagtacccgacgacgag
actgtcaaccaaatgattgcacgacatgaagaggagtttgacctgttcatgcgcatggac
ctggaccgccggcgcgaggaggcccgcaaccctaagcggaagccgcgcctgatggaggag
gatgagctcccatcctggatcataaaggatgatgcggaggtggagcggctgacctgtgag
gaggaggaggagaagatgtttggccggggttcccgccaccgcaaggaggtggactatagc
gactctttgacagagaagcagtggctcaaggccatcgaggagggcacgctggaggagatc
gaagaggaggtccggcagaagaaatcgtcacggaagcgcaagcgggacagcgatgccggc
tcctccaccccgaccaccagcacccgcagccgggacaaggatgacgagagcaagaagcag
aaaaagcgagggcggccacctgccgagaagctctccccaaacccacccaacctcaccaag
aagatgaagaagatcgtggacgccgtgatcaagtacaaggacagtagtagtggacgtcag
ctcagtgaagtgttcatccagctgccctcgcgcaaggagctgcctgagtactacgagctc
atccggaagcctgtggacttcaaaaagataaaggaacgtatccgcaaccacaagtaccgc
agcctcagcgacctggagaaggacgtgatgctgctgtgccagaatgcacagaccttcaac
ctggagggctcgctgatctacgaggactccattgtcctgcagtcagtctttaccagcgtg
aggcagaaaattgagaaagaggacgacagtgaaggcgaggagagtgaggaagaggaggag
ggcgaggaggaaggctctgaatctgaatcccgctctgtcaaagtgaagatcaagctcggc
cggaaggaaaaggcacaggatcggctaaaggggggtcggcggcggccaagccgtggctcc
cgggccaaaccagttgtgagtgatgacgacagtgaggaggaacaagaagaggaccgctca
ggaagtggcagtgaggaagactga
DBGET
integrated database retrieval system
