Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101971721
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Entry
101971721 CDS
T10664
Symbol
Col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101971721 (Col25a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101971721 (Col25a1)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101971721 (Col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101971721
NCBI-ProteinID:
XP_040149063
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MLVKKHAGKGGGRESGSEDPSPCGQRCARTMPQCTALATLLSVVAVISCLYLGVKTNDLQ
ARIAALESVKGDPSVRLLPDTLDQLKAMVQEKVERLLAQKSYEHMAKIRIAREAPSECNC
PAGPPGKRGKRGRRGESGPPGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMVFCHLTLLNL
CSFAQGEPGEQGEKGDTGESGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGL
PGLPGIKVNTALILFINTFSQQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGADGEQ
GLKGSKGDMGDPGMPGEKGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHG
PPGPMGPHGLPGPKGASGLDGKPGARGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYG
LPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGL
PMPGCWQK
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcatgcagggaaaggagggggtcgagagtctggatccgaagacccg
agcccctgcgggcagcggtgtgcccgtaccatgccccagtgcacggccctggcgacactc
ctatcagtggtggccgtgatttcttgtctgtaccttggggtgaaaaccaacgacctccag
gctaggatcgccgctctcgaatccgttaaaggggatccttctgttcgtctgctgcctgat
accttggatcagctgaaggccatggtgcaagagaaagtggagcgccttctggctcagaaa
tcctatgaacatatggctaaaataagaattgcaagagaagcaccttcagagtgcaactgc
ccagcaggtcctccgggaaaacgagggaagaggggtcggagaggagaatctggtcctcct
ggcccccctggtccaaaaggtgataagggagaacagggtgatcagggacctcggatggtg
tttcctaaaatcaatcatgggtttctctctgctgatcagcagctcattaaacgccgcctg
attaagggtgaccaaggtcaggcagggcctccaggacccccaggccctccaggcccacga
gggccacctggggacacagggaaagatggcccccgtggaatgccaggagtacctggtgaa
ccaggaaaaccaggagaacaaggcttgatggtgttttgtcacttaacgttactcaatctt
tgttcttttgctcagggagagcctggagaacaaggagaaaagggagatactggagaaagt
ggccccaaaggtgacacaggcgaaaagggtgaccctggatcatctgctgcaggaattaag
ggagaacctggagaatctggtcgtccagggcaaaagggtgaaccagggcttcctgggctt
cctggacttccggggataaaggtaaatactgcactgatactatttatcaatacattttcc
caacagaggattaccaccttaactgtcacgggtccccctgggcctcctggacctcaagga
ctacaagggccaaagggagaacaaggatctccaggaatcccaggagctgatggagagcag
ggactcaaaggctcaaagggagacatgggggacccaggtatgccaggtgaaaaaggagga
attggacttcctggattaccgggtgccaatggagtgaagggagaaaagggagactccgga
ttgccaggtccccagggtccttctatcataggcccaccaggccctccaggtcctcatggc
ccacctggccccatgggaccccatggacttcctggaccaaagggagcatctggcttagac
ggaaagccaggagcccggggtacagatggtcctatgggacctcatggccctgcaggcccc
aaaggagaaagaggggaaaagggagctatgggagaacctggacccagaggaccgtacggc
ctgcctgggaaagatggagagcctggtcttgatggtttccctggtccacgaggcgagaag
ggtgacctgggagaaaagggagaaaagggattccgaggcgttaagggggaaaaaggggag
ccaggccagcctggcctggatgggctggatgccccttgccaattgggcccagatggatta
cccatgcctggctgttggcaaaagtga
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