Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101971731
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Entry
101971731 CDS
T10664
Symbol
Lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03018
RNA degradation
iti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101971731 (Lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
101971731 (Lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101971731 (Lsm8)
03041 Spliceosome [BR:
iti03041
]
101971731 (Lsm8)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101971731 (Lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
101971731 (Lsm8)
Spliceosome [BR:
iti03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101971731 (Lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
101971731
NCBI-ProteinID:
XP_005332327
UniProt:
A0A287CZR7
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctgccttggagaactacatcaaccgaactgttgctgttattacttctgatggg
agaatgattgtgggaacactgaaaggttttgaccaaaccattaatttgattttggatgaa
agccatgaacgagtatttagctcttcacagggagtagagcaagtagtactaggactatac
attgtaagaggtgacaatgttgctgtcattggagaaattgatgaagagacagattctgcg
cttgacttggggaacatacgagcagaacctctaaattctgtagcacactga
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integrated database retrieval system
