Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101971906
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Entry
101971906 CDS
T10664
Symbol
Msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti01524
Platinum drug resistance
iti03430
Mismatch repair
iti05200
Pathways in cancer
iti05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101971906 (Msh2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101971906 (Msh2)
09162 Cancer: specific types
05210 Colorectal cancer
101971906 (Msh2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
101971906 (Msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iti03400
]
101971906 (Msh2)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101971906 (Msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
AAA_27
Motif
Other DBs
NCBI-GeneID:
101971906
NCBI-ProteinID:
XP_005324544
UniProt:
I3M958
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MAVQPKETLQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVIKYLGPAGAKTLQSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDTIQKKLGLCEFPD
NDQFSNLEALLIQIGPKECILPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAIIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKKRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYGGKHQVLLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREVMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLSSLNEEYTKNKAEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRIILKASRHACVEIQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMF
ATHFHELTALAKQIPTVNNLHVTALTTEETLTMLYQVKKGACDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGVSQGGDETEPAAKKCYLEREQGEKIIQEFLSKVKQVPFTEMS
EENIKIKLKQLKAEVIAKNNSFVNEIISRIKVTT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaggaaacgctgcagttggaaagcgcggccgaggtcggcttcgtg
cgcttcttccagagcatgccggagaagccgaccaccaccgtgcgcctcttcgaccggggc
gacttctacacggctcacggcgaggacgcgctgctggccgcccgagaggtgttcaagacc
cagggggtgatcaagtacttgggtcctgcaggagcaaagactctgcagagtgttgtgctt
agtaaaatgaattttgaatcttttgtaaaagatcttctacttgttcgtcagtatagagtt
gaagtttataaaaacagagctggaaataaggcatccaaggaaaatgattggtatttggca
tttaaggcttctcctggcaatctttctcagtttgaagatattctgtttggtaacaatgat
atgtcagcttccattggtgttgtgggtgttaaaatgtccacagttgatggtcaaagacag
gttggagttgggtatgttgataccatacagaagaagctaggactgtgtgaattccctgat
aatgatcaattttccaatctggaggctctcctgattcagattggaccaaaggaatgtatt
ttaccaggaggagagactgctggagatatggggaaactgaggcaggttattcagagagga
ggaattctgatcacagaaagaaaaagagctgacttttccacaaaagatatttatcaggat
ctaaatcggttgttgaaaggcaaaaagggagaacagatgaacagtgctgtcttgccagaa
atggagaatcaggttgcagtttcatcattgtctgcaataattaagtttttagaactctta
tcagatgattcaaattttggacagtttgaactgactacttttgacttcagccagtacatg
aaactggatattgcagcagtgagagctcttaaccttttccagggttctgttgaagatact
actggctctcagtctctggctgcattgctgaataaatgcaaaactcctcaaggacaaaga
ctggttaaccagtggattaagcagcctctcatggataagaagagaatagaagaaagatta
aacttagtggaagcttttgtagaagatgcagaactgagacaaagtttacaagaagattta
cttcgtcgattcccagatcttaaccgacttgccaagaaatttcaaagacaagcagcaaac
cttcaagattgttaccgactctatcagggcataaaccaactccctaatgttattcaggct
ctggaaaaatacggaggaaaacaccaggtattgttgttggcagtttttgtgactcctctt
attgatcttcggtctgatttctccaagtttcaggaaatgatcgaaacaactttagatatg
gatcaggtggaaaaccatgaattccttgtaaaaccttcatttgatcctaatctgagtgaa
ttaagagaagtaatggatgacttggaaaagaagatgcagtccacattaataagtgcagcc
cgagatcttggattggaccctggcaaacagattaaattggattccagtgcacagtttgga
tactactttcgtgtaacctgtaaggaagaaaaggtccttcgtaataataaaaactttagt
acagtagatatccagaagaatggtgttaaatttactaacagtaagttgtcttctttaaat
gaagaatatactaaaaataaagctgaatacgaagaggcccaggatgccattgtcaaagaa
attgtcaatatttcttcaggctatgtagagccaatgcagacactaaatgatgtgttagct
cagctagatgctgttgtcagctttgctcatgtgtcaaatggagcacctgttccatatgta
cgaccagtcattttggagaaaggacaaggaagaattatattgaaagcatccagacatgct
tgtgtcgaaattcaagatgaagttgcatttattcctaatgatgtacactttgaaaaagat
aaacagatgtttcacatcattactggtcccaatatgggaggtaaatcaacatatattcgc
caaactggggtgatagtactcatggcccaaattggatgttttgtaccgtgtgaatcagca
gaagtatccattgtggactgcatcttggctcgggtaggggctggtgacagtcagttaaaa
ggagtctccacattcatggctgaaatgctggaaactgcttccatcctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacctatgatggattt
ggactagcgtgggctatatccgattacattgcaacaaagattggtgctttttgcatgttt
gcaacccattttcatgaacttactgccttagccaaacagattcccactgttaataaccta
catgtcacagcactaaccactgaagagaccttaactatgctttatcaagtgaagaaaggt
gcttgtgatcagagttttgggattcatgttgcagagcttgctaatttccctaggcatgta
atagaatgtgccaaacaaaaagccctggaactcgaagagtttcagaatattggagtctca
caaggaggtgatgaaacagaaccagcagcaaagaagtgctatctggaaagagagcaaggt
gaaaaaattattcaggagtttctatccaaggtgaagcaagtgccctttactgaaatgtcg
gaagaaaacattaaaataaagttaaaacagctgaaagctgaagtaatagcaaagaataat
agttttgtaaatgaaatcatttcacgaataaaggttactacatga
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