Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101972024
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Entry
101972024 CDS
T10664
Symbol
Cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti02010
ABC transporters
iti04024
cAMP signaling pathway
iti04152
AMPK signaling pathway
iti04530
Tight junction
iti04971
Gastric acid secretion
iti04972
Pancreatic secretion
iti04976
Bile secretion
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
101972024 (Cftr)
09132 Signal transduction
04024 cAMP signaling pathway
101972024 (Cftr)
04152 AMPK signaling pathway
101972024 (Cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
101972024 (Cftr)
09150 Organismal Systems
09154 Digestive system
04971 Gastric acid secretion
101972024 (Cftr)
04972 Pancreatic secretion
101972024 (Cftr)
04976 Bile secretion
101972024 (Cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
iti02000
]
101972024 (Cftr)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
101972024 (Cftr)
Transporters [BR:
iti02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
101972024 (Cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
SMC_N
AAA_21
AAA_29
RsgA_GTPase
T2SSE
AAA_16
DUF87
Zeta_toxin
DO-GTPase2
Intein_splicing
MeaB
MMR_HSR1
NTPase_1
NB-ARC
Motif
Other DBs
NCBI-GeneID:
101972024
NCBI-ProteinID:
XP_005332328
LinkDB
All DBs
Position
Unknown
AA seq
1480 aa
AA seq
DB search
MQKSPLEKASVISKLFFSWTRPILRKGYRQRLELSDIYQIPSADSADNLSEKLEREWDRE
LASKKNPKLINALRRCFFWRFMFYGILLYLGEVTKAVQPLLLGRIIASYDPDNKVERSIA
IYLAIGLCLLFIVRTLLLHPAIFGLHHIGMQMRIAMFSLIYKKTLKLSSRVLDKISIGQL
VSLLSNNLNKFDEGLALAHFVWIAPLQVTLLMGLLWDLLQASAFCGLAFLIVVALVQAGL
GRMMMKYRDQRAGKINERLVITSEMIENIQSVKAYCWEEAVEKMIENLRQTELKLTRKAA
YVRYVNSSAFFFSGFFVVFLSVLPYALIKGIILRKIFTTISFCIVLRMAVTRQFPWAVQT
WYDSLGAINKIQDFLQKQEYKTLEYNLTTTEVEMENVTAFWEEGFGELFEKAKLNNNNRK
ISNGDNSLFFSNFSLLGAPVLKDINFKIEKGQLLAVAGSTGAGKTSLLMMILGELEPSEG
KIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR
ILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGYDSFDQFSVERRNS
ILTETLRRFSLEGDASVSWNETKKQSFKQTGEFGEKRKNSILNPINSMRKFSVVQKTPLQ
GNGMEDESDEPLERRLSLIPDSEQGEAILPRCNVINTGPTFQGRRRQSVLNLMTHSVNQG
PSIPRRTTTTRKMSLAPQTNFTEMDIYSRRLSQESGLEISEEINEEDLKECFFDDVESIP
AVTTWNTYLRYITIHKSLIFVLIWCLVVFLAEVAASLVVLWLLKNNPPQDEGNSTKNANN
SYAVIVTSTSFYYVFYIYVGIADTLLALGLFRGLPLVHTLITVSKILHHKMLHSVLQAPM
STLNTLKAGGILNRFSKDIAILDDLLPLTIFDFIQLLLIVIGAVAVVSVLQPYIFLATVP
VIAAFIVLRAYFLRTSQQLKQLESEGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKA
LNLHTANWFLYLSTLRWFQMRIEIIFVIFFIAVTFISILTTGEGEGSVGIILTLAMNIMN
TLQWAVNSSIDVDSLMRSVSRVFKFIDMPTEDGKSSKSIKPSKDDQLSKVMIIENQHVKK
DDIWPSGGQMTVKDLTAKYVDGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL
LNTEGEIQIDGVSWDSISLQQWRKAFGVIPQKVFIFSGTFRKNLDPYELWSDQEIWKVAD
EVGLRSVIEQFPGKLDFVLLDGGYVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT
YQIIRRTLKQAFADCTVILCEHRIEAMLECQRFLVIEENKVRQYDSIQKLLSEKSLFRQA
ISSSDRMKLFPHRNSSKHKSRSQIASLKEETEEEVQETRL
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcgcctctggaaaaggccagcgtcatctccaaactttttttcagctggact
agaccaattttgaggaaagggtacagacagcgcctggaattgtcagacatataccaaatt
ccttctgctgattctgctgacaatctatctgaaaagttggaaagagaatgggatagagaa
ctggcttcaaagaaaaatcccaaactcattaatgcccttcggcgatgttttttctggaga
tttatgttctatggaatcttattatatttaggggaagtcaccaaagcagtacagcctctc
ttactgggaagaatcatagcttcttatgatccagataacaaggtggaacgctccatcgcc
atttacctagccataggcttatgcttgctctttatcgtgaggacactgctccttcacccg
gccatttttggccttcatcatattggaatgcaaatgagaatagctatgtttagcctgatt
tataagaagactttaaaactgtcaagccgtgttctggataaaataagtattgggcagctt
gttagtctcctttccaacaacctgaacaaatttgatgaaggacttgcactggcacatttt
gtatggattgctcctttacaagtgactctcctgatggggctgctctgggacttgttacag
gcctctgctttctgtggccttgctttcctgatagttgtagcccttgtgcaagctgggtta
gggagaatgatgatgaagtacagagatcagagagctggaaagatcaatgaaagacttgtg
atcacctcagaaatgattgaaaatatccaatctgtgaaggcatactgctgggaagaagca
gtagaaaaaatgattgaaaacctaagacagacagaactgaaactgacccggaaggcagcc
tatgtgagatacgtcaatagctcagccttcttcttctcaggattctttgtggtgttttta
tctgtgcttccctatgcacttatcaaaggaatcatccttcgaaaaatattcacaaccatc
tcattctgcattgtgctgcgcatggcggtcacacggcaattcccttgggccgtacaaaca
tggtacgactctcttggagcaataaacaaaatacaggatttcttacaaaagcaagagtat
aagacattagaatataacttaacaactacagaagtagagatggagaatgtaaccgccttc
tgggaggagggatttggggaattatttgagaaagcaaaactaaataataacaatagaaaa
atttccaatggtgacaatagcctcttcttcagtaacttctccctccttggtgcccctgta
ttgaaagatatcaacttcaagatagaaaaaggacaattattggcagttgctggatctact
ggagcaggcaagacttcacttctaatgatgattctgggagaactggagccttcagagggt
aaaattaagcacagtggaagaatttcattttgctctcagttttcctggatcatgcctggt
accatcaaagaaaatattatctttggtgtttcctatgatgagtatagatacaggagtgtc
atcaaagcatgccaactagaagaggacatctccaagttcgcagagaaagacaacatagtc
cttggagaaggtggaatcacactgagcggaggtcaacgtgcgcggatttctttagcaaga
gcagtatacaaagatgctgatttgtacctattagactctccttttggatacctagatgtt
ttaactgaaaaggaaatatttgaaagctgtgtgtgtaaattgatggctaacaaaactagg
attttggtcacttctaaaatggaacatttaaagaaggctgacaaaatattaattttgcat
gaaggtagcagctatttttacgggacattttctgaactacaaaatctacggccagacttt
agttcaaagctcatgggatatgattcttttgaccagttcagtgtggaaagaagaaattca
atcctaacagagacattgcgccgtttctcattagaaggagatgcttctgtctcttggaat
gaaacaaaaaaacaatcttttaaacagactggagagtttggggaaaaaaggaagaactct
attctcaatccaatcaactcaatgagaaaattttcagttgtacaaaagaccccattacaa
ggaaatggcatggaagatgaatctgatgagcccttagagagaaggctgtccctaattcca
gattctgagcagggggaggccatcctgcctcgctgcaatgtgatcaacactggccccaca
tttcagggccgaaggagacagtctgttctaaacctgatgacacactcggtgaaccagggg
ccaagcatcccccggaggacaacaactacacgaaaaatgtcattggcccctcagacaaac
ttcactgaaatggatatttattcaagacgtttgtctcaagagagtggcttagaaatcagt
gaagaaattaatgaagaagatttaaaggaatgcttttttgatgatgtagagagcatacct
gctgtgaccacgtggaacacatatcttcgatatatcactatccacaagagcttgattttt
gtgctaatttggtgcttagttgtttttctggctgaggtggctgcttctttggttgtgttg
tggctactgaaaaacaatcctcctcaagatgaagggaatagtactaaaaatgcaaataac
agctatgctgtgattgtcaccagcaccagcttctactatgttttttacatttatgtggga
atagctgacactttgcttgctctgggattattcagaggtttgccactggtgcatacacta
atcacagtgtcaaaaatcttacatcacaaaatgttacattctgttctacaagcacccatg
tcgaccctcaacacgttgaaagcaggtgggattcttaatagattctccaaagatatagca
attttggatgaccttctgcctcttaccatatttgacttcatccagttgttattaattgtg
attggagctgtggccgtggtctctgttttacaaccctacatcttcctagcaacagtgcca
gtgatagcggcttttattgtgttgagggcatatttcctccgcacctcacaacaactcaaa
caactggagtctgaaggcaggagtccaatcttcactcatcttgttacaagtctaaaagga
ctatggacgcttcgtgcctttggacggcagccttactttgaaactctgttccacaaagct
ctgaatttacatactgccaactggttcttgtatctatcaacgctgcgctggtttcaaatg
agaatagaaattatctttgtcatcttcttcattgctgttaccttcatttccattttaaca
acaggtgaaggagaaggatctgttggtattattctaactttagccatgaatattatgaac
acattgcagtgggctgtaaactctagcatcgatgtggatagcttgatgcgatctgtgagc
cgtgtctttaagttcattgacatgccaacagaagacggtaaatcctcgaagtccatcaaa
ccatccaaggatgaccagctctcaaaagttatgattattgagaatcaacatgtgaagaaa
gatgacatctggccctcagggggccaaatgactgtcaaagacctcacagcgaaatatgta
gatggtgggaatgccatattagaaaacatttccttctcaataagtcctggccagagggtg
ggtctcttgggaagaactggatcaggaaagagcacattgttatcagcttttctgagactg
ctgaatactgaaggagaaatccagattgatggtgtatcttgggactcaatatctttgcaa
cagtggaggaaagcctttggagtgataccacagaaagtatttatcttttctggaacattt
agaaaaaacttggatccctatgaactgtggagtgatcaagaaatatggaaagttgcagat
gaggttggactccgatctgtgatagagcagtttcctgggaagctcgactttgtccttctg
gatgggggttatgtgttaagccatggccataagcagttgatgtgcttggccagatctgtt
ctcagtaaggcaaagatcctactgcttgatgaacccagcgctcacttggatcccataaca
taccaaataattcgaagaactttgaaacaagcattcgctgattgcacagtaatcctctgt
gaacacagaatagaagcaatgttggaatgtcaacgatttttggtcatagaagagaacaaa
gtgcggcagtatgattccatccagaagcttctgagtgagaagagcctctttcgacaggcg
atcagctcctcggacaggatgaagctcttcccccaccgcaactccagcaagcacaagtct
cggtcccaaattgcttctctgaaggaagagacagaagaagaggtccaagaaacaaggctc
tag
DBGET
integrated database retrieval system
