Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101972203
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Entry
101972203 CDS
T10664
Symbol
Nyx
Name
(RefSeq) nyctalopin
KO
K08129
nyctalopin
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
iti00535
]
101972203 (Nyx)
Proteoglycans [BR:
iti00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
101972203 (Nyx)
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_5
LRR_9
LRRNT
Motif
Other DBs
NCBI-GeneID:
101972203
NCBI-ProteinID:
XP_021581239
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Position
X
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AA seq
476 aa
AA seq
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MLVLLLHVVLLGLPSTRATEACLRACPAACTCSTAERSCSVRCDRAGLLRVPAEFPCEAT
SIDLDRNGLRILGERAFGTLPSLRRLSLRHNNLSFITPGAFKGLPRLAELRLAHNGELRY
LHARTFVALGRLRRLDLAACRLFSVPERLLAELPALRELAAFDNLFRRVPGALRGLANLT
HAHLERGRIEAVASSSLLGLRRLRSLSLQANRVRVVHAGAFGDCGALEHLLLNDNLLAEL
PADAFRGLRRLRTLNLGGNALGVVARAWFADLAELELLYLDRNSIAFVEEGAFQNLSGLL
ALHLNSNRLAVLSWAAFQPGFFLGRLFLFRNPWRCDCHLEWLRDWIEGSGRVADVPCASP
GSVAGLDLSQVAFERSPDGLCVDPEELNLTTSSPGSSPGPVATTVSRFSSLLSKLLAPRV
PVEETANVTGGLANASLFDSLPSCGVAGPGHRTVLLFISRPLLSVAHYVVFGLQRD
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgctggtcctgcttctgcatgtggtgctcctcggcctgcccagcacccgggccaccgag
gcctgcctgcgtgcctgcccggctgcctgcacctgcagcaccgccgagcgcagctgctcc
gtgcgctgcgaccgcgcaggcctcctgcgggtgccggccgagttcccgtgcgaggccacc
tccatcgatctggacagaaacggcctgcgcatcctaggggagcgggcctttggcacgctt
ccgtccctgcgccgcctgtctttgcgccacaacaacctgtcctttatcacgccgggcgcc
ttcaagggtctgccgcgcttggcggagctgcgcctggcgcacaacggcgagctgcgctac
ctgcacgcgcgcaccttcgtcgctttgggccgcctgcgccgccttgacctggccgcgtgt
cgcctgttcagtgtgcccgagcgcctcctggccgagctgccggccctgcgcgagctcgcc
gccttcgacaacctgttccgccgcgtgccgggcgcgctccgcggcctggccaacctgacg
catgcgcacttggagcgcggccgcatcgaggccgtggcctccagctcgctgctgggcctg
cggcgcctgcgctcgctcagtctgcaggccaaccgcgtccgcgtcgtgcacgccggtgcc
ttcggcgactgcggcgccctggagcacctgctgctcaacgacaacctgctggccgagctg
ccggccgacgccttccgcggcctgcgccgcctgcgcacgctcaacctgggcggcaacgcg
ctgggcgtggtggcgcgcgcctggttcgccgacctggcggagctcgagctgctctacctg
gaccggaacagcatcgccttcgtggaggagggcgccttccagaacctctcgggcctgctg
gccctgcacctcaacagcaaccgcctcgctgtgctctcctgggccgccttccagcccggc
ttcttcttgggacgcctcttcctcttccgcaacccgtggcgctgcgactgccacctggag
tggctgcgggactggatagagggctctgggcgcgtggccgatgtgccgtgcgcctccccg
ggctccgtggctggcctggatctcagccaggtggccttcgagcgctcccccgacggcctg
tgcgtggacccagaggagctgaacctcaccacgtctagtccaggctcgtccccaggacca
gtggccaccaccgtgagcaggtttagcagtctcctctccaagttgctcgccccaagggtc
ccagtggaggagacagccaacgtcactggagggctggccaacgcctcgctgttcgatagc
cttccctcctgtggggtggccggccccggccacaggaccgtattgctcttcatctcccgt
cccctgctcagtgtggctcactacgtggtgtttggcctgcagagggactga
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