Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101972393
Help
Entry
101972393 CDS
T10664
Symbol
Ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
iti03009
]
101972393 (Ddx55)
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101972393 (Ddx55)
Ribosome biogenesis [BR:
iti03009
]
Eukaryotic type
Pre-60S particles
Helicases
101972393 (Ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101972393
NCBI-ProteinID:
XP_005329607
UniProt:
I3M7B4
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MEHVTEGSWGSLPVPLHPRVLGALRELGFPSMTPVQSATIPLFMRNKDVAAEAVTGSGKT
LAFIIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKYFPQFSQILWIGG
RNPGEDVERFRRQGGNIIVATPGRLEDMFRRKSEGLDLVSCVKSLDVLVLDEADRLLDMG
FEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGMAASSTQKTPS
RLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVKNVKIMCIH
GKMKHKRNKIFMEFRKLRGGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTA
RIGHGGSALVFLLPMEESYVNFLAINQKCPLQEMKLQKNTVDLLPKLRALALADRAVFEK
GMKAFVSCVQAYAKHECSLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDIN
TDTIPFKDKAREKQRQKLLEEQRKEKMEHEGRRKFMKNKAWSKQKAKKERKKKMNEKRKR
EEGSDIEDEDMEELINDTRLLKKFKKGKITEEQLEKGLLTSGKRRATTADLEMSDLDDDC
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgacagagggctcctgggggtccctgcccgtgccgctgcacccgcgggtg
ctgggtgcgctgcgggagctgggctttccgtccatgacgccggtgcagtctgcaacaatc
cctctgttcatgagaaataaagacgttgctgcagaagcggtcacaggtagtggcaaaacg
ctggcctttatcatccccattctggaaattcttctgagaagggaagagaagttaaaaaag
agtcaggtgggagccataatcatcaccccaactcgagagctggccattcaaatcgatgag
gtcctgtcgcatttcacgaagtacttcccacagttcagccagattctttggattggaggc
aggaaccctggagaagatgtcgagaggttcaggcgacaagggggaaatatcatagtggcg
actccaggccgcctggaggacatgttccggaggaagagtgagggcttggacctagtcagc
tgtgtgaagtccctggatgtcctagtgctggatgaggcagacagacttctggatatggga
tttgaagcaagcataaacaccattctggagtttttgccaaagcagaggaggacgggcctt
ttctctgccacacagacacaggaagtggagaacttggtgagagcaggcctccggaaccct
gtccgcatctcagtgaaggagaagggtatggcagccagcagcacccagaagaccccctcc
cgcctggagaactactacatggtgtgtaaggcagatgagaaatttaatcagttggtgcat
tttcttcgaaatcataaacaggagaaacatctggtcttcttcagcacctgcgcctgtgtg
gaatactatggaaaggctctggaggcccttgtgaagaacgtgaagataatgtgcattcat
ggaaagatgaaacacaagcgcaacaagatcttcatggagttccgcaagttgcggggtggg
attttggtgtgcactgatgtgatggcgcgggggattgacattcctgaagtgaactgggtt
ttgcagtatgaccctcccagcaacgccagtgcctttgtccatcgctgtggccgcacagcc
cgcattggccatggtggcagcgccctggtgtttctcctgcccatggaagagtcgtacgtc
aatttcctggcaattaaccaaaaatgccccctgcaggagatgaaacttcagaagaacaca
gtggacctgctgcccaagctcagggccctggccctggccgacagagcggtgtttgaaaag
ggcatgaaagcctttgtgtcctgtgtccaggcctacgcaaagcatgagtgcagcctcatc
ttcagattgaaggatcttgattttgctagtcttgctcgaggtttcgccctgctgaggatg
cccaagatgccagaactgagaggaaagcaatttccagattttgtgcctgtggacattaat
acagacacgattccatttaaagataaagctagagaaaagcaaaggcagaaactattggag
gaacaaagaaaagagaaaatggaacatgaagggagaagaaaattcatgaaaaataaagct
tggtcgaagcagaaggccaaaaaggaaaggaagaaaaagatgaatgaaaaaaggaaaagg
gaagagggttctgatattgaagacgaggatatggaggaacttattaatgacacaaggctc
ttgaaaaagtttaagaaaggcaaaattactgaagaacaacttgagaaggggttgttgaca
agtggcaaaagaagagccacaacagcagatttggagatgtcagatttggacgatgactgc
tga
DBGET
integrated database retrieval system
