Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101972902
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Entry
101972902 CDS
T10664
Symbol
Scn11a
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
iti04040
]
101972902 (Scn11a)
Ion channels [BR:
iti04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101972902 (Scn11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
101972902
NCBI-ProteinID:
XP_040145964
LinkDB
All DBs
Position
Unknown
AA seq
1794 aa
AA seq
DB search
MDDRCYPVIFPDERNFRPFTSDSLAAIEKRIAAQKEKKKSKDKTVAEPQLRPQLDLKASR
KLPKLYGNIPRDLIAKPLEDLDPYYRNHKTFMVLNKKRTIYRFSAKRALFILGPFNPLRS
LAIRILVNSLFSMFIICTVIVNCGLMASVGFKENNCTDIKENNSIGIKENNSTGIKENST
EPDFTEYIFTAIYILEAVIKILARGFILDEFSFLRDPWNWLDSIVIGTAIASYFPFKKIN
LLSLRTFRVFRALKAISVVSGLKVIVGALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMG
NLNQKCIRTNCTHNFEANEYCFEKEEDSKEPMLCGSWFGSRSCPNNSTCNHTRINPDNNY
TSFDNFGWSFLAMFRLMTQDSWEKLYRQTLRTSGIYSVFFFVVVIFLGSFYLINLTLAVV
TMAYEEQNRNVAAETEAKEKMFQEAQQLLKEEKEALVAMGIDRSSLNSLQASSFSPKKRK
FFGNKKKKSLLKIKSRKDKTSGSDSDGEAPSNPPLLEQTKRLSQNLPVDLFDEHGDPFQR
QRALSAVSILTITMHEQEKSQEPCLPCGENLASRYLVWNCSPWWLCVKKALRFVMTDPFT
ELAITICIIINTIFLSMEHHNMDPNLKSILQYGNWVFSGIFIAEMCLKIIALDPYHYFRQ
GWNIFDSIVALLSVAEVFFQGSKWSFLRSFRVLRVFKLAKSWPTLNTLIKIIGHSVGALG
HLTVVLAIVIFIFSVVGVQLFGSKFCRQKSAHLCSVSEDPCLRRWHMGDFYHSFLVVFRI
LCGEWIENMWACMQEVNKPMCIIVFVLILIIGKLVVLNLFIALLLNSFSNEERYGISEGE
ARKTKVQLALDRFGRAFSFVIHTLEHFCCKRCKRHNLPKLKEMTADSDAESKDIIPLAAD
MKRGSEAQEEFGVLNSAQKTFSLGYDRSWLAPLAEEENDVEYFDKDDASSIMHSEAERQA
YDLHQEKPAIPGDQSVEIDVFPEEEVYLAVQNPRKKSDAISIPSECSTIDLQEAFGYLYR
IVPQQKQPERCLPKGLHCFFPCCRKDRRKSLWVIWWNLRKTCYQIVKHSWFESFIIFVIL
LSSGTLIFEDVHLDKRPHVREILNYTDHVFTYIFIFEMGLKWVAFGFGKYFTSAWCWLDF
IIVIVSVVSLFTVNTWKPLRTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLI
FWLIFCILGVNFFSGHFGRCISGKDKSKYLPYVENRSQCNETWVNLEVNFDNVGIAYLAL
LQVATYKGWLDIMEAAVDSRGEEKQPAFEAKPLMYLYFVVFIIFGSFFTLNLFIGVIIDN
FNQQQKKLGGQDIFMTEEQKKYYSAMKKLGTKKPQKPIPRPLNKCQGLVFDLVTHQVFDI
FIMSLIVLNMVGMMAESYDQSEDVTVTFDYINIAFVIIFTIECLIKIFALRQYYFTNGWN
LFDCVVVVLSIISTMVSALENQEHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFAL
MMSLPSLFNIGLLLFLVMFIYAILGMKFFSEVKKDAGIDNIFNFKTFEGSMLCLFQITTS
AGWDSLLNPMLNSGDSGNATANSHLPAVATAYFVSYIIISFLIVVNMYIAVILENFNTAT
EESEDPLGEDDFEIFYEVWEKFDPEATQFIDYSALSDFADALPEPLRVAKPNKFQFLVMD
LPMVSGDRLHCMDILFAFTTRVLGDSTGLDTMKAMMEEKFMEANPFRKLYEPIVTTTKRK
EEERGAAIIQKAFRRYMMKMTKCALEDRPPASFQTLCNGDLSSSEGTKGKVHYD
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggtgctacccagtgatcttcccagatgagcggaatttccgccccttcact
tctgactctctggctgccatagagaagcggattgctgcccaaaaagagaaaaagaagtcc
aaagacaagactgtggcagaaccccaacttcgacctcaacttgacctgaaggcctccagg
aagttgcccaagctctatggcaacattcctcgtgacctgatagcgaagcccctggaagac
ttggacccgtactatagaaatcataagacatttatggtgttgaacaagaagagaaccatc
taccgcttcagtgccaagcgtgccttgttcattttgggacctttcaatccactcagaagt
ttagccattagaatcctggtcaattcattgttcagcatgttcatcatctgcacagtcatc
gtcaactgtgggctaatggcttcggttggctttaaggaaaacaattgcaccgacattaag
gaaaacaatagcatcggcattaaggaaaacaatagcaccggcattaaggaaaacagtacc
gagccagactttactgaatacatcttcactgcgatttatattttggaagccgtgataaaa
atattggcaagaggttttatcctggatgagttctctttccttcgagatccgtggaactgg
ctggactccattgtcattggaacagcgattgcatcttattttccatttaaaaaaatcaat
ctgttgtccctgcgtaccttccgagtgttcagagctttgaaggcaatttcagtagtttca
ggtctgaaggttattgtgggggccttgctgcgctctgtgaagaagcttgttgacgtgatg
gtcctcaccctcttctgcctcagcatcttcgccctggtaggtcagcagctcttcatggga
aatctgaaccagaaatgtatcaggaccaactgtacccacaactttgaagctaatgaatat
tgctttgaaaaggaagaagattccaaagaacccatgttgtgtggcagctggtttggcagc
agatcctgtcccaacaattctacgtgcaaccacaccagaattaatcctgacaataattat
acaagttttgacaacttcggctggtcttttcttgccatgttccggcttatgactcaagat
tcctgggagaagctttatcgacagaccctgcgcacctctgggatctactcagtcttcttc
ttcgtggtggtcatcttcctgggatctttctacctgattaacttaaccctggctgttgtc
accatggcttatgaggagcagaacaggaatgtagctgcagagactgaggccaaggaaaaa
atgtttcaggaagcccagcagctgttaaaggaggaaaaggaggctctggttgccatgggg
attgacagaagttcactcaattcccttcaagcatcgtctttttccccaaagaagagaaag
ttctttggaaataagaaaaagaagtccttattgaagataaagtctaggaaagacaaaact
tcaggatctgattctgatggagaggctccctcaaatccacctcttttagagcaaaccaaa
cgattgtcccagaacctgccagtggacctgtttgatgagcacggagaccccttccaaaga
cagagggcactgagtgctgtcagcatccttaccatcaccatgcatgaacaagaaaaatcc
caggagccttgtctcccatgtggggaaaacctggcatccagatatctcgtgtggaactgc
agtccctggtggctgtgcgttaagaaggccctgaggtttgtgatgacggaccctttcact
gagctggccatcaccatctgcatcataatcaacaccatcttcttgtccatggagcatcat
aatatggatccaaatctgaagagcatattgcaatacggaaattgggttttcagtggcatt
tttatagcagaaatgtgcctaaaaatcattgcactcgatccgtaccactactttcgccaa
ggctggaacatttttgatagcatcgtagctctcctgagtgttgcagaagtcttctttcaa
gggtcaaagtggtcattcttgcgttccttcagagtgctgagggtcttcaagttagccaaa
tcctggccaactttaaatacactaattaagataattggccactctgttggagctcttgga
catctgaccgtggtcctggccatcgtgatctttattttctcggtggttggcgtgcagctt
tttggctctaaattctgtcgccaaaagagtgcacacctctgttctgtctccgaagacccg
tgtttgcggcgctggcacatgggagatttttaccactccttcctagtggtattccgcatc
ctctgtggggaatggatcgaaaacatgtgggcatgtatgcaagaagttaacaaaccaatg
tgcattattgtctttgtcttgatattgatcataggaaagcttgtggtgctcaacctcttc
attgctttattgctcaattccttcagcaatgaagagaggtatggaatctcagaaggagag
gccaggaaaaccaaagtgcagttagccctggatcggttcggccgtgctttttcttttgta
attcacacacttgaacatttctgttgcaagcgatgcaagaggcataacttaccaaagcta
aaagagatgacagcagactctgatgcagagagcaaggacattattcctctggctgcagat
atgaaaagggggtcagaagcccaggaggaatttggagtactaaactctgcacaaaagact
ttcagccttgggtatgataggagttggctggccccacttgcagaggaagagaatgatgtt
gaatattttgataaagatgatgcatcatccatcatgcactcggaggctgaaagacaggcc
tatgaccttcaccaggaaaagcctgccatcccaggagatcaaagtgtggaaattgatgtg
tttcctgaggaagaagtttatttggccgtgcaaaatcccagaaagaagtctgatgccatc
agtattccatcagaatgtagcactatagatctgcaggaagcctttggatatttatataga
attgttccccaacaaaagcaaccagagagatgtttgcctaaaggtctgcattgcttcttt
ccctgctgtaggaaggacaggagaaagtctctctgggtcatttggtggaacctgcggaaa
acctgctaccaaatagtgaaacacagctggtttgagagctttattatctttgtgattctg
ctgagcagtgggacgctgatatttgaagatgttcaccttgacaagcggccacacgtccga
gaaatactaaattatactgaccatgttttcacatatattttcatcttcgagatgggtctg
aaatgggtggcctttggatttgggaagtatttcaccagtgcctggtgctggctcgatttc
atcattgtgattgtctccgtggtcagtctcttcaccgtaaatacgtggaagccccttcgg
actctgcgagcactgagacctcttcgagcgctgtctcagtttgaaggaatgaaggtggtg
gtcaatgctctcataggggccattcctgccattctcaacgttttgctcgtttgcctgatt
ttctggctcatattttgtatcctgggagtaaacttcttttccggacattttggaagatgc
attagtggaaaagataaaagcaaatatcttccttatgttgagaaccgaagtcagtgtaat
gagacttgggtcaacctggaagtcaactttgacaatgtggggatcgcttaccttgctctg
ttgcaagtggcaacatataaaggctggctggacatcatggaagcagctgttgattccaga
ggggaagaaaaacagccagcatttgaggcaaaaccactcatgtacctttactttgttgtt
tttatcatctttgggtcattcttcactctgaatctctttattggtgttattattgacaac
ttcaaccaacagcagaaaaagttaggtggccaagacatttttatgacagaagaacaaaag
aaatattacagtgcaatgaaaaaactaggaaccaagaaacctcaaaaacccattccaagg
cctctgaacaaatgtcaaggtcttgtgtttgacctggtcacacaccaggtctttgacatc
ttcatcatgagtctcattgtcctaaacatggttggcatgatggctgaatcatatgatcaa
tccgaagacgtaacagttacttttgattacatcaacatagcctttgtgatcatctttacg
atagagtgtctcatcaaaatctttgctttgaggcaatactacttcaccaatggctggaac
ttatttgattgtgtggtcgtggttctttctattattagtacaatggtctctgccttggaa
aatcaggagcacattccttttccaccaacactcttcagaatcgtgcgcctggctcggatt
gggcgcatcctgagacttgtcagggcagcacgaggaatcaggaccctcctttttgctctg
atgatgtcccttccctctctgttcaacattggtcttctactctttctggtcatgtttatt
tatgccattttaggtatgaaatttttttccgaagtgaagaaagacgctgggattgataac
atattcaacttcaaaactttcgaaggcagcatgctctgtctcttccagataaccacgtca
gcaggctgggactccctcctcaaccccatgctgaattcaggagactcaggtaatgccaca
gccaacagtcacctcccagctgtagccaccgcctactttgttagttacatcatcatctcc
ttcctcatcgtggtcaacatgtatatcgctgtgattttagagaacttcaatacagccacg
gaagaaagtgaggaccctctgggggaagatgattttgaaatattctatgaagtctgggaa
aagtttgaccctgaagccacacagtttattgactactctgccctttctgactttgccgat
gccctgcctgagcctttgcgtgtggccaagccaaataaattccagttccttgtcatggac
ttgcccatggtgagtggggatcgtctccactgcatggatattctctttgccttcaccact
agggtccttggtgactccactggcctggataccatgaaagctatgatggaggaaaagttc
atggaagccaatcccttcaggaagttatatgaacccatagtcactaccaccaagagaaag
gaagaggaaagaggtgctgctatcattcaaaaggcctttcggaggtacatgatgaagatg
accaagtgtgccttggaagacaggcctcctgcgtcattccagacactttgcaacggagac
ttgtcaagctccgagggaaccaagggcaaagtgcactatgactga
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integrated database retrieval system
