Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101973712
Help
Entry
101973712 CDS
T10664
Symbol
Vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03250
Viral life cycle - HIV-1
iti03272
Virion - Hepatitis viruses
iti04144
Endocytosis
iti04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101973712 (Vps4b)
03272 Virion - Hepatitis viruses
101973712 (Vps4b)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101973712 (Vps4b)
09143 Cell growth and death
04217 Necroptosis
101973712 (Vps4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101973712 (Vps4b)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101973712 (Vps4b)
Membrane trafficking [BR:
iti04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
101973712 (Vps4b)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
Check point factors
Other check point factors
101973712 (Vps4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
AAA_16
TIP49
AAA_14
AAA_5
RuvB_N
AAA_22
IstB_IS21
AAA_25
DUF815
AAA_18
AAA_2
AAA_17
nSTAND3
RNA_helicase
AAA_24
NPHP3_N
AAA_33
PhoH
AAA_7
AAA_28
Mg_chelatase
NACHT
Parvo_NS1
ResIII
KAP_NTPase
TPR_1
bpMoxR
DUF5113
ABC_tran
Sigma54_activat
MCM
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
101973712
NCBI-ProteinID:
XP_005323065
UniProt:
I3N6H1
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MASAGANLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVIKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKKKEKKPQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVNWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEAHARAAMFKLHLGATQNSLTEADFRDLGKKTEGYSGADISVIVRDALMQPVRKVQSAT
HFKKVRGPSQADPNSIVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagctggggccaaccttcagaaagcaatagatcttgctagcaaagcagcacaa
gaagacaaagctgggaattatgaggaagctcttcaactttatcaacatgctgtacagtat
tttctccatgtaattaaatatgaagcacagggtgataaagccaagcagagtattagggca
aagtgtacagaatatctagatagagcagagaaactgaaggaatatctgaagaagaaggag
aaaaaaccacagaagccagtaaaagagggacagccaagtccagctgatgagaaggggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccattgttatagagcgaccaaatgtgaattggagtgatgttgctggtcttgaa
ggagcaaaagaagcacttaaagaggctgtgatattgccgattaaatttcctcatcttttt
acaggcaaaaggaccccttggagaggaatcctattatttggcccacctggaacaggaaaa
tcctatttagccaaagctgtagcaacagaagcaaacaactcaacatttttttcaatatct
tcctctgaccttgtttctaagtggctaggtgaaagtgaaaaactagttaagaacttattc
cagcttgccagagagaacaagccttctattattttcatcgatgaaattgactctctctgc
ggttcaagaagtgaaaatgaaagtgaagctgcacgaagaattaagactgagttcctggtt
caaatgcaaggggttggtgtggacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattcgacgaagatttgagaaacgaatttatattcctttg
ccggaagcccatgcccgagcagcaatgtttaaactacacttgggcgccactcaaaatagc
cttacggaagctgacttccgagatcttgggaagaaaaccgaaggctactcaggagcagat
ataagcgtcattgtacgtgatgcacttatgcaacctgttagaaaagtgcagtcagctacg
catttcaaaaaggttcgtggaccttcccaagctgatcctaacagcattgtagatgatctg
ctgacaccgtgctctccaggcgatcccggtgccattgaaatgacatggatggatgtccct
ggagataaacttctggaaccagttgtttccatgtcggatatgttacggtcgctatcgaat
acaaaacctacagtcaatgaacatgacttgttgaagttaaagaagtttacagaagatttt
ggccaagaaggctga
DBGET
integrated database retrieval system
