Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101974000
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Entry
101974000 CDS
T10664
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101974000 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
iti00536
]
101974000 (Col13a1)
Glycosaminoglycan binding proteins [BR:
iti00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101974000 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101974000
NCBI-ProteinID:
XP_040129230
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MVAERARKAATAAARGPGELGAPGTVVLAAARAERCARLPSPGSCGLLALTLCSLAFSLL
AHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPKMSPACNCP
PGPPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDSGMSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGHPGPKGDTGLAGPRGQPGPPGQKGEKGQCGEYPHRLLPLLNSVRLAP
PPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI
QGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKEPIQMGPGSGALERSAQGGPGRSEESK
ALRHFPPRTVSPQGEKGAAGSSGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPK
GEVGMDGQAGPPGRQGDKGQPGAAGEQGPAGPKGSKGEPGKGEMVDYNGNLNEALQEIRT
LALMGPPGLPGQIGPPGAPGTPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGK
DGSPGMKGEIGSPGSPGEKGEKGETGPAGSPGLDGPTGEKGEPGGQGRPGATGLPGPIGL
PGFTGEKGEAGEKGDPGAEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGAQGEK
GDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGHR
GFKGEKGEPGLPGLDGLDAPCPLVWHHPPLPAWPIWASLRVWFVPACPHTPVPSAQLPLP
VGSVDTQGHPASAGVPGHAALLHAKFAGVFSWPSAAHHLVWAILPPLM
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgagcccgcaaagcggccaccgcggctgcccgcggcccgggagagctg
ggcgcgcccgggacagtggtgctggcggcggcgcgagctgagcgctgcgcgcggctgccc
agcccaggttcgtgcgggttgctggcgctgaccctctgctcgctggccttcagcctgctc
gcccactttcggaccgcggagctgcaggcccgggtgctgcgcttggaagcagagcgcggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggacgagaaatgg
aagctccactcacggaggcgccgggaggccccgaagatgtccccagcatgtaactgcccg
ccaggacctcctggccccaccggaagacccgggctcccaggggacaaaggtgccattggg
atgcctggacgtgtgggagtgaagggccaaccgggcgagaagggtgcccctggagactcc
gggatgtccatcatcggtccccgcggccccccaggccagccaggcacgcgaggctttcct
ggattcccgggtcccatcgggctggacggcaagccgggccatcccggaccaaaaggggac
acgggcctggcgggtccccgaggacagccgggacccccagggcagaaaggagaaaagggt
cagtgtggcgagtacccacaccggctgctgcctctcctcaattccgtgcgcctggctcca
ccccccgtcataaaaaggcggaccttccagggcgaacagggccaggctggcatccaaggc
ccacctgggccaccaggcccccctggaccaagtggacctctggggcacccaggactgcca
gggcccatggggccacctggcttacctgggcctcctggaccgaagggagacccggggatc
cagggctaccacggccggaagggagaacggggtatgccagggatgccgggcaagcacgga
gccaagggggctcctgggatcgccgtggccggaatgaaggagccaatccaaatgggacct
ggaagtggagcccttgagagatcagcccaaggagggccaggtaggagcgaggagagcaag
gccctaagacacttcccaccccgtactgtctccccgcagggcgagaagggggctgccggt
tcctctgggctccccggtcttctgggacagaagggagagaaaggtgacgctggcaactct
attggaggaggcaggggtgagcccggccccccagggctccctgggcccccagggccaaag
ggagaagtgggtatggatggccaggccggcccccctggacgacaaggagacaaggggcag
cccggagccgctggagaacagggaccagctggccccaagggctccaagggcgaaccaggg
aagggagagatggtggactacaacggaaacctcaacgaggctctccaggagatccgaaca
ctggccctgatggggcctcctggtctacctgggcaaataggcccccccggagctccaggg
accccaggccagaagggggagatcggactgccaggccctccaggacacgatggagaaaag
ggacctcgaggcaaaccaggagacatgggcccccctggcccccaaggacccccaggaaag
gatgggtctccaggaatgaagggagaaatcggatccccagggagcccaggagagaagggg
gagaaaggggagacgggcccggcaggctctccgggtctagacggcccaactggggagaaa
ggagaacccggtggccaagggaggcccggagcgacaggattgcctggccccatcgggctc
ccgggatttacaggagagaaaggagaagctggagagaagggtgacccaggagcagaggtt
cctgggccaccagggccagagggacctcctgggcctccgggactccaaggtgttcctgga
ccaaagggagaggcaggactagatggagccaaaggagagaagggggcccagggagaaaaa
ggagaccgagggcctctgggcctacccggtaccccaggaccaattggagttccaggccca
gctggaccaaagggcgagaggggcagcaaaggagacccagggatgacgggaccaacggga
gcagctgggcttcctggtttacatggaccacccggggacaaagggaaccggggacaccga
ggttttaaaggagagaaaggggagccggggttaccagggctggacggactggatgccccc
tgcccattggtatggcaccaccctcccttgcccgcatggccaatttgggcttccctccgt
gtgtggtttgtacctgcgtgcccccacactcctgttccttccgcccagctcccacttcct
gtggggtctgtagacacccagggtcaccctgcctctgctggggtacccggccatgctgcc
ctcttgcatgcaaagtttgctggggtgttttcttggccttctgcagcacatcaccttgtc
tgggccatcctcccacccttgatgtag
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