Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101974126
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Entry
101974126 CDS
T10664
Symbol
Rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X4
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03440
Homologous recombination
iti03450
Non-homologous end-joining
iti04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101974126 (Rad50)
03450 Non-homologous end-joining
101974126 (Rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
101974126 (Rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
iti03032
]
101974126 (Rad50)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101974126 (Rad50)
DNA replication proteins [BR:
iti03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101974126 (Rad50)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101974126 (Rad50)
BRCA1-C complex
101974126 (Rad50)
NHEJ (non-homologous end-joining)
MRX complex
101974126 (Rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
AAA_29
DUF2703
Motif
Other DBs
NCBI-GeneID:
101974126
NCBI-ProteinID:
XP_005335832
UniProt:
I3MEF5
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCSQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQDQKVKECQTELKYLKQNKEKACEIRDQITSKEAQLTSSKEI
VKSYENELDPLKNRLKEIEHNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIQSLATQLELDGFERGPFSERQIKNFHKLVRERQERETETANQLMNDFAE
KETLKQRQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
LKKAERELSKAEKNCNVETLKTEVINLQNEKVDLDRTLRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSEELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELRRKEEQLSSYEDKLFDICGSQDFESDLDKLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFHTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKERRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKSDIEEQETLLGTIIP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQLLKSTTNDLKSEKLQISSNLQRRQQLEEQTVELSTEVQS
LYREIKDAKEQINPLETTLEKFQQEKEELINKKHTSNKIAQDKLNDIKEKIKNIHGYMKD
IENYIQDGKDDYKKQKEIELNKVIAQLSECDKNKEKINKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEENIDNIKRNHSLALGRQKG
YEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENISASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLIITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCNVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttggaatagaggacaaa
gataagcaaattatcactttcttcagccccctcacaattttggttggacccaatggggca
gggaagacgaccatcattgaatgtctaaagtatatttgtactggagatttccctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacagatgtgagagcc
cagattcgtttgcagtttcgtgatgtcaatggagaacttatagctgtgcagagatctatg
gtgtgtagtcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattacaaga
acaaagcatggtgaaaaggtcagtctcagttctaaatgtgcagaaattgacagagaaatg
ataagttctcttggggtttccaaatctgtgctaaataatgtcattttctgtcaccaagaa
gactctaattggccattaagtgaaggaaaggctctgaagcaaaagtttgatgaaattttt
tcagcaacaaggtacattaaagctttagagacgcttcgtcaggtacgtcagacacaagat
cagaaagtaaaagaatgtcagacagagctgaaatatctgaaacaaaataaggaaaaagct
tgtgaaattcgtgatcagattactagtaaagaagcccagttaacatcttcaaaggaaatt
gtcaaatcctatgagaatgaacttgacccactgaagaatcgcctaaaagaaattgaacac
aatctctctaaaattatgagacttgataatgaaattaaagccttggatagccgaaagaaa
caaatggaaaaagataatagtgaactggaacagaaaatggaaaaggtttttcaagggact
gatgaacaactaaatgatttatatcataatcatcagagaacagtaagagagaaagaaagg
agattagtagactgtcagcgtgaattggaaaaactaaacaaagaatctaggcttctcaat
caagaaaaatcagaacttcttgttgaacagggtcgtctacagctacaagcagatcgtcat
caagaacatatccgagctagagactcattaattcagtctttggcaacacagctagaattg
gatggctttgagcgtggaccattcagtgaaagacagattaaaaattttcacaaactagtg
agagagagacaagaaagggaaacagaaactgccaaccaactgatgaatgactttgcagaa
aaagaaactctgaaacagagacagatagatgagataagggataagaagactggactggga
agaataattgagctaaaatcagaaatcctaagtaagaagcaaaatgaactgaaaaatgtg
aagtacgaattacagcagttggaaggatcatcagacaggattcttgaactggaccaggag
ctcaaaaaagctgaacgtgaactaagcaaggctgagaaaaattgcaatgtagagacccta
aaaacagaagtaataaaccttcaaaatgagaaagtagacctagacaggaccttgcgtaaa
ttggaccaggagatggagcagttaaatcatcatacaacaacccgtacccagatggagatg
ctgaccaaggacaaagctgacaaagatgaacaaatcagaaaaataaaatctaggcacagt
gaagaactaacttcattgttggggtatttccccaacaaaaagcaactcgaagactggctt
catagtaaatcaaaagaaattaatcagactagggacagacttgctaaattgaacaaggaa
ctagcttcagcagagcaaaataaaaatcatataaataatgagctgagaagaaaggaggaa
cagttgtccagttatgaagacaagctgtttgatatttgtggtagccaggattttgaaagt
gatttagacaagcttaaagaggaaattgaaaaatcctcaaaacagagagccatgctggct
ggagccacagcagtctactcccaattcattactcagctaacagatgaaaaccagtcatgt
tgccccgtctgtcagagagtttttcatacagaggctgaattacaagaagttatcagtgat
ttgcagtctaagctgaggcttgctccagataaactcaagtcaacagaatcagagctgaag
aaaaaagaaaggcggcgtgatgaaatgctggggcttgtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacaaactacagaatgtcaatagagac
atacagcgcctaaaaagtgacatagaagaacaggaaacacttttaggtacaataatacct
gaagaagaaagtgctaaagtatgtctgacagatgttacaattatggagaggttccagatg
gaacttaaagatgttgaaagaaaaattgcacagcaagcagctaaactacaaggaatagac
ttagatcgaactgttcaacaagtaaaccaggagaaacaagaaaaacaacacaaattagac
acagtttccagcaagatcgaattgaatcgtaaacttatacaggaccagcaggaacaaatt
caactcctaaaaagtacaacaaatgatcttaaatcagagaaacttcagatatccagtaac
ttgcagcgtcgtcagcaactagaggagcagactgtagaattatccactgaagttcagtct
ttatatagagagataaaggatgctaaagagcagataaatcctttggaaacaacactggaa
aagttccagcaggaaaaagaagaattaatcaacaaaaaacatacaagcaacaaaatagca
caggataaactgaatgatatcaaagagaagattaaaaatattcatggttacatgaaagac
attgagaattatattcaagatggaaaagatgactataagaagcaaaaagaaattgaactt
aataaagtaatagctcaactaagtgaatgtgacaaaaacaaagaaaagataaataaagaa
atgggaatcatgagacaagatattgatacacaaaagatacaagaaagatggctacaggac
aacctcactttaagaaaaagaaatgaggaactaaaagaagttgaagaagaaagaaaacaa
catttgaaggaaatgggtcaaatgcaggttttacaaatgaaaaatgaacatcagaagttg
gaagagaacatagacaatataaaaagaaatcacagtttggcactggggcgacagaaaggt
tacgaggaagaaattattcattttaagaaagaacttcgagaacctcagtttcgagatgct
gaggaaaaatatagagaaatgatgattgttatgagaacaacagagctggtaaacaaagat
ctggacatttattataagacccttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaataaaattattcgtgatctttggcgaagtacctatcgtggacaagatatt
gaatacatagaaatacgatctgatgctgatgaaaatatatcagcttctgataaaagacgg
aattataactaccgagtggtgatgctgaagggagacacagccttggacatgcgaggacga
tgcagtgccggacaaaaggtattggcctcactcatcattcgcttggcgctggctgaaact
ttctgcctgaactgtggcatccttgccttggatgagccaacaacaaatcttgaccgagaa
aacattgaatctcttgcacacgctctggttgagataataaagagccgctcccagcagcgc
aacttccagcttctgataatcactcatgatgaagattttgtggagctcttaggacgttct
gaatatgtggagaaattctacaggattaagaagaacattgatcagtgctcagagatcgtg
aaatgcaatgttagttccctgggatcttatgttcattag
DBGET
integrated database retrieval system
