Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101974352
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Entry
101974352 CDS
T10664
Symbol
Nup188
Name
(RefSeq) nucleoporin NUP188 isoform X6
KO
K14311
nuclear pore complex protein Nup188
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03013
Nucleocytoplasmic transport
iti05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101974352 (Nup188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101974352 (Nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101974352 (Nup188)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101974352 (Nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Gar1
Motif
Other DBs
NCBI-GeneID:
101974352
NCBI-ProteinID:
XP_005321116
UniProt:
A0A287CU12
LinkDB
All DBs
Position
Unknown
AA seq
1753 aa
AA seq
DB search
MAAAADGPCVRSSRELWTILLGRSALRELNQIEAELNKHWQRLLEGLSYYKPPSPSSAEK
VKANKDVPSPLKELGLRISKFLSLDEEQSVQLLQCYLQEDYRGTRDLLKMVLQDERQSQA
LILKIADYYYEERTYILRCVLHLLTYFQDERHPYRVEYADCVDKLEKELVLKYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
EQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRRELHQFAQDG
LICQDMDHLMLTFGDILHHAPVLLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYLTR
LLRSLAIGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKH
KPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADWLLPITSRVYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMSQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTVAFLRLITTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHK
WRYNSHGVREQIGCLILELIHAILNLCHETNLHNSHTPSLQSLCICSLAYTEAGQTVINI
MGIGVDTIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDA
FLTRLRSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVTDGSDGSKEFSLGEWSCLH
VVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKCFAYWSGYVK
SLAVHMAETEGSSCTSLLEYQMLISAWRMLLIIATSHADIMHLTDSAVRRQLFLDVLDGT
KALLLVPASMNCLRLGSMMCTLLLVLLRQWKRELGPVDEILGPLTEILEGVLQADQKLME
KTKAKVFSAFITVLQMKEMRVSDIPQYSQLVLNVCETLQEEVIALFDQTRHSLASGSATE
DKDSMETDDCSRLRHKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLLTTL
EVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGLTQSICLPLLSVYQLSTNGTGQT
PSTSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQCLNAVRTV
QSLACLEEADHTVGFILQLSHFRKEWHFHLPQLMCDIQVNLGYLCQACTSLLHSRKMLQH
YLQNKNGDGLPSTVAPRVQRPPTTTAAASAVPSCSSKQPTADLEASEQRALHTVQYGLLK
ILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNV
ALNMLGELDKKKEPLTQAVRLGTQAEGTRTLKSLLMFTMENCFYLLISQAMRYLRDPAVH
PRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKATSLSKAIPESQEPL
IQLVQAFVRHVQR
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccgccgatggaccgtgtgtgaggagcagtagagaactgtggacaattcta
cttggaaggtcagctctgagagaactgaatcagattgaagcagaattgaataaacattgg
cagcggttgttagaagggctttcttactacaaacctccaagtccaagttcagcggaaaaa
gtgaaagctaataaagatgtaccttcaccactgaaggaactgggtttaaggatcagcaag
tttttgagtcttgatgaagaacaaagcgtgcagttgctccaatgttaccttcaggaggat
tacaggggtactcgggacttgctcaagatggtcttgcaagatgagaggcagagccaggcc
ttaatcctgaagattgcagattattactatgaagaaagaacctatattcttcgttgtgtc
ttacaccttctcacttatttccaagacgaaagacacccctacagggttgaatatgcagac
tgtgttgataagttggagaaggaactagttttaaaatataggcagcaatttgaagagcta
tataaaactgaagcaccaacttgggagacgcatgggaacctcatgactgagcgccaggtg
tcacgctggtttgttcagtgccttcgggagcagtccatgctgctagaaattattttcctt
tactacgcatactttgagatggcacctagtgacctactagtattgactaaaatgtttaaa
gagcaaggatttggtagtaggcagactaatcggcacttagtggatgagaccatggatcca
tttgtagatcggattggctatttcagtgcccttatcctggtggaaggcatggatattgag
tctctgcataagtgtgctttggatgataggagagaattgcaccaatttgctcaggatggg
cttatttgtcaggatatggaccacttgatgttgacctttggggacattctacatcatgcc
ccggtgcttttggcctgggctctcctccgtcacaccctgaacccagaagaaacaagcagt
gtggtccggaagataggtggcacagctatccagctgaatgtatttcagtacttgactcga
ctactgcggtcacttgccattgggggaaatgattgtaccacaagtactgcctgcatgtgt
gtctatggcctcctctctttcgttctgacctcattggagctgcacacgctgggaaatcag
caggatgtaattgacacagcgtgtgaagtcctggcggacccttctcttccagaactcttc
tggggaacagaaccaacttctggtcttgggatcattctggacagtgtatgtggaatgttc
ccccatctcctttccccactcctgcaattactccgagccctggtatcaggaaagtccact
gccaaaaaggtatatagcttcctagataagatgtctttctacaatgaactttacaagcac
aagcctcatgatgtaatctctcatgaagatggaactctttggagaaggcagacgcccaaa
ctcctatatcctctgggtggtcagaccaaccttcgcatacctcaaggcactgtgggccaa
gtaatgctggatgatagggcttacctggtgcgttgggaatactcctacagcagctggacc
ctttttacctgtgagattgaaatgctgcttcatgttgtttcaactgcagatgtgattcag
cattgccagagagtgaaacccatcattgatctggtccacaaggtcatcagcacagaccta
tctatagcagactggctcctgcccatcacgtcccgtgtctacatgctgctgcaacggttg
acaacagtgatctctccccctgtggatgtcattgcctcttgtgtcaattgcttgacagtt
ttggctgcccggaatccagcaaaggtctggactgatcttcgtcacacaggttttttacca
tttgtggcccatcctgtctccaacatgagtcagatgattagtgcggaggggatgaatgct
ggtgggtacgggaaccttctgatgaacagtgaacagccccaaggcgagtatggcgtcact
gttgcctttctccgcttgattaccacccttgtcaagggccagcttggtagtacccagagc
caaggcctggtaccctgtgtcatgtttgtgctgaaggagatgcttcccagctaccacaag
tggcgctacaactcccatggtgtgcgggaacagattggttgcctgatcctggagctgatt
catgcaatactgaacctgtgccatgagacaaacctgcacaacagtcatactcccagtctg
cagtctctctgcatctgtagtctggcatacacagaagcaggacaaaccgtcatcaatatc
atgggcattggtgtggacaccattgacatggtgatggctgctcagcctcgaagtgatggg
gcagagggccaggggcagggccagctgctgatcaagactgtgaaactggcattctctgtc
accaacaatgtcattcggctgaaacctccttctaatgtggtgtcccccttggagcaggct
ctcacacagcatggtgcccatggaaacaacctcattgctgttctagccaagtacatctac
cataaacatgacccagctttgccacgtctggccattcagctgctgaaacgtctggccacg
gtggccccaatgtcagtgtatgcttgtctgggcaatgatgcagctgccattcgtgatgcc
ttcctgacccgccttcggagcaagattgaggacatgcgcatcaaagtcatgattctggaa
tttctcacagttgctgtggagacccagccaggccttatagaactgtttctaaatctggag
gtgacagacggcagtgatggctccaaggaattcagccttggtgagtggagttgtctccac
gtggtcctggagctgattgattcccagcagcaggatcggtactggtgcccacctctgctg
catcgtgcagccattgcctttctgcatgctctgtggcaggaccgccgggacagtgccatg
ctggtcctcagaaccaaacccaagttttgggagaatttaaccagtccgttgtttggaacc
ctttctcctccctcagagacatctgagcccagcatcctggaaacctgtgccctcatcatg
aagataatttgcttggagatatactatgtagttaagggttcgttagaccaatcattaaaa
gatacactcaagaaattttccagtgagaagtgctttgcctactggtcggggtatgtcaag
tccttggcagttcacatggctgagacagaaggcagcagctgcacgtccttattagagtat
cagatgttgatctctgcctggaggatgcttctcatcattgccaccagtcatgcagatatc
atgcacttgactgactctgcggtacgacgccagctctttcttgatgtgctggatgggacc
aaagctttactcctagttcctgcctccatgaactgcctccgccttggctccatgatgtgc
acactgctgctcgtcctcctccggcagtggaaaagagagttaggtcctgtggatgaaatc
cttgggcctctgacggagatcctggaaggtgtgctgcaggcagaccagaagctcatggag
aagaccaaggccaaggttttctcagcgttcatcacagtgttacagatgaaggagatgcga
gtaagtgacatcccccagtactcccagctggttctgaatgtctgcgagacactccaagaa
gaggtgattgcactctttgaccagacccgccacagtctggcatcaggcagtgccacagag
gacaaggacagcatggagacagatgactgctctcggctccgacataaggaccagcgtgat
ggggtgtgtgtcctgggcctgcacctagccaaggagctatgtgaggtggatgaggatggg
gactcatggctgcaggtgactcgcaggctccccatcttgcccaccctcctcaccaccctg
gaggtgagcctccgcatgaagcagaacctgcatttcactgaggctgcactgcacctgctc
ctcaccctggctcgcacccagcagggagccacagcagtggctggggccggcctcacccag
agcatttgtttgcctctcctgagtgtgtaccagctcagcaccaacggcactgggcagaca
cccagcacatctcggaaatccctggatgccccttcctggccaggggtctaccgcctgtcc
atgtccttgatggagcggctgctcaagactctgcgctacaatttcctgactgaggccctg
gacttcgtgggcgtccaccaggagcggactttgcaatgccttaatgcagtgaggactgtg
cagagcctggcctgcctggaggaggcggaccacaccgtgggcttcattctacaactctcc
cacttcaggaaggagtggcacttccacctgcctcagctcatgtgtgatatccaggtgaac
ctgggttacctgtgccaggcctgcacctccctcctgcacagccgcaagatgctgcagcat
tacttacagaacaaaaatggggatggcctcccctcgactgttgctcccagagttcagcga
cctcccaccaccactgctgctgcttctgctgtcccctcctgctcctctaaacagcccact
gctgacctagaggcctcagagcagcgagccttgcacacagtccagtatggccttctcaag
atcctcagcaggaccctggcagccctgcgccacttcaccccagatgtctgccagatcctg
ctggatcagtccctggatcttgctgaatacaacttcctgtttgccctgagttttaccact
cccacatttgactctgaagtggccccctcctttgggaccctcctggccacagtgaatgtg
gccctcaacatgcttggagagctggacaagaaaaaggagcccctcacccaggctgtgagg
cttggcacacaggcagaagggaccagaacattaaagtccctcctgatgttcaccatggaa
aactgcttctacctgctcatctcccaggcaatgcggtaccttagggacccagctgtgcac
ccacgggacaaacagcggatgaagcaggagctcagctcagagttgagcacactgctttcc
agcctctcacgctacttccgccgaggagcccccagctcccctgctgctggtgtcctgccc
tcaccccagggcaaggctacctctctctctaaagccatccctgagagtcaggagcctctg
atccagctggtgcaagcttttgtgcggcatgtgcagagatag
DBGET
integrated database retrieval system
