Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101974434
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Entry
101974434 CDS
T10664
Symbol
Atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04136
Autophagy - other
iti04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101974434 (Atg4b)
04136 Autophagy - other
101974434 (Atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
iti01002
]
101974434 (Atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
iti04131
]
101974434 (Atg4b)
03029 Mitochondrial biogenesis [BR:
iti03029
]
101974434 (Atg4b)
Peptidases and inhibitors [BR:
iti01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
101974434 (Atg4b)
Membrane trafficking [BR:
iti04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
101974434 (Atg4b)
Mitochondrial biogenesis [BR:
iti03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
101974434 (Atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
101974434
NCBI-ProteinID:
XP_021575321
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MQSHTKLLSLWGSLSSAPKRAELGRNTAPVLGLWVLPLLLAEPADELHPATLTYDTLRFA
EFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRNFPAIGGTGPTSDTGWGC
MLRCGQMIFAQALVCRHLGRDWRWVQRKRQPDSYFSVLNAFLDRKDSYYSIHQIAQMGVG
EGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRVCRASPPCAGAAA
LPADPDGHCNGFPAGAEITNRPSLWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLG
VIGGKPNSAHYFIGCVGEELIYLDPHTTQPAVELTDSCFIPDESFHCQHPPCRMGIGELD
PSIAVGFFCKSEDDFNDWCQRVRKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDV
ERLERFFDSEDEDFEILSL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgcagagccatacaaagctgctatcattatggggaagtctcagcagtgctccaaagagg
gcggagctgggcaggaacacagcgcctgtcctgggtttgtgggttctgcccctgctgctg
gctgagcctgcagatgagctgcatccagccactctgacctatgacactcttcggtttgcc
gagtttgaggatttccctgagacctcagagcctgtttggatcctgggcagaaaatacagc
atcttcacagaaaaggacgagattttgtccgatgtggcgtccagactttggtttacctac
aggagaaacttcccagccattgggggaactggccccacctcggacacaggctggggctgc
atgctgcgctgtggacagatgatctttgctcaggccctagtgtgccgacacctaggccga
gattggaggtgggtgcagcggaagaggcagcccgacagctacttcagtgtcctcaatgcc
ttcctggacaggaaagacagctactactccattcaccagatagcgcaaatgggagtcggc
gaaggcaagtcaataggccagtggtacggaccgaacacggtggcccaggtcctcaagaag
ctggctgtgtttgacacctggagctccttagctgttcacatcgcgatggacaacacggtg
gtgatggaggagatcagaagggtgtgcagagccagccctccctgtgcaggggctgccgcg
cttcctgcagaccctgacgggcactgtaatggattccctgctggagcagagatcaccaac
cggccgtcactgtggaggcccctggtacttctcatccccctgcgcctgggtctcacggac
atcaatgaggcctatgtggagacactaaagcactgcttcatgatgccccagtccctgggc
gtcattggcggaaagcccaacagcgcccactacttcatcggctgtgtcggggaggagctc
atctacctggacccccacacaacccagcctgctgtggagctgactgacagctgcttcatc
cctgacgagagcttccattgccagcaccctccttgcagaatgggcatcggggagcttgac
ccatccatcgctgtggggtttttctgcaagtctgaggacgacttcaatgattggtgccag
agggtcagaaagctgtccctgcttgggggcgccttgcccatgtttgagctggtggagcag
cagccctcccacctggcctgccccgatgtcctgaacctgtccctggattcttctgacgtg
gagcgactggaaagattctttgactcagaagatgaagactttgaaatcttgtccctctga
DBGET
integrated database retrieval system
