Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101975784
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Entry
101975784 CDS
T10664
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03030
DNA replication
iti03420
Nucleotide excision repair
iti03430
Mismatch repair
iti03440
Homologous recombination
iti03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101975784 (Rpa1)
03420 Nucleotide excision repair
101975784 (Rpa1)
03430 Mismatch repair
101975784 (Rpa1)
03440 Homologous recombination
101975784 (Rpa1)
03460 Fanconi anemia pathway
101975784 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
iti03000
]
101975784 (Rpa1)
03032 DNA replication proteins [BR:
iti03032
]
101975784 (Rpa1)
03400 DNA repair and recombination proteins [BR:
iti03400
]
101975784 (Rpa1)
Transcription factors [BR:
iti03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101975784 (Rpa1)
DNA replication proteins [BR:
iti03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101975784 (Rpa1)
DNA repair and recombination proteins [BR:
iti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101975784 (Rpa1)
MMR (mismatch excision repair)
101975784 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
101975784 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
101975784
NCBI-ProteinID:
XP_040126466
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MVGPLSEGAIAAIMQQGDTSIKPILQVIVSTSVCNFLSLYLCFSAFMLATQLNPLVEEER
LSSNCICQINRFIVNTLKDGRRVVILMDLEVLKSAETVGMKIGNPVPYNEGQGQQQVVPS
PVSAVSAPTSKPQQQNGSSGVGSTASKAFGAPKTFGKPGGTSLSYPSGGTQSKVVPIASL
TPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNEQVDKFFPLIE
VNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIGDLEN
KPKDSLVDIIGICKSYEDATKITVKSTNREVSKRNIYLMDMSGKVVNATLWGEDADKFDG
SRQPVMAIKGARVSDFGGRSLSILSSSTIIVNPDIPEAYKLRGWFDSEGQALDGVSISDL
KSGGVGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKV
IDQQNGLYRCEKCDSEFANFKYRMILSANIADFQENQWVTCFQESAEAILGQNAAYLGEL
KEKVSHIFYYSCNFRSFTFKIRVKLETYNDESRIKATVMDVKPVDYRDYGKRLIMNIRRN
AAM
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggttggacccttaagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaaacctattctccaggtcattgtaagtacctctgtatgtaattttctttccctttat
ttgtgcttttcagcttttatgttggcaacacagttgaaccctcttgttgaggaagaacgg
ttgtccagtaattgtatttgccaaattaaccgatttattgttaacactctgaaagatgga
aggagagtagttattttgatggacttagaagttttgaaatcagctgaaacagttggaatg
aaaattggtaatccagtgccctataatgaaggacaagggcagcagcaagtagttccttcc
cctgtctcagcagtcagtgcaccaaccagcaagccccagcaacagaatgggagctcggga
gtgggttctactgcatctaaggcttttggtgctccaaagacatttggaaaacctggagga
accagcctatcatatccttctggggggacgcagtccaaagtggtacccattgccagcctc
accccttaccagtccaagtggactatttgtgctcgtgttaccaacaaaagtcagatccgt
acctggagcaattctcgaggagaagggaaacttttctctatagaactggttgatgaaagt
ggtgaaatcagagctactgcattcaatgaacaagtggacaagttctttccccttattgaa
gttaacaaggtgtattatttctcaaaaggcaccctgaagattgctaacaaacaattctct
gctgttaaaaatgactatgaaatgactttcaataatgagacttctgtcatgccttgtgaa
gatgatcatcatttacctacggttcagtttgatttcacagggattggtgacttagagaat
aagcctaaagactcacttgtagacataattgggatctgcaagagctatgaagatgctact
aaaatcacagtaaagtcaaccaacagagaagtttctaaaagaaatatctatttaatggac
atgtcagggaaagtggtgaatgctactctgtggggagaagatgctgacaagtttgatggt
tctagacagcccgtgatggccattaaaggagccagagtttccgattttggtggacggagc
ctttccatattgtcttcaagtactatcattgtgaatcctgacatcccagaggcctataag
cttcgtggatggtttgactcagaaggacaagccttagatggtgtttccatctctgatctg
aagagtggaggagtaggaggaagcaacaccaactggaaaaccttgtatgaggttaaatca
gagaatctgggccaaggtgacaaggcagactattttagctctgtggcaacagtggtgtat
cttcgcaaagagaactgtatgtaccaggcttgcccaactcaggactgcaataagaaagtg
attgaccaacaaaatggattgtaccgctgtgaaaagtgcgacagtgaatttgccaatttt
aaataccgaatgatcttgtcggcaaatattgcggattttcaagaaaatcagtgggtgact
tgtttccaggagtctgctgaagctatcctcggacaaaatgctgcttatcttggggaatta
aaagagaaggttagccacatattttattatagctgtaattttcgatctttcacattcaaa
atcagggtcaaactggagacctacaatgatgagtctcgaattaaggccactgtgatggac
gtgaagcccgtggactacagagactatggcaaaagactgatcatgaacatcaggagaaac
gcggcgatgtaa
DBGET
integrated database retrieval system
