Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101975932
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Entry
101975932 CDS
T10664
Symbol
Dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03040
Spliceosome
Brite
Enzymes [BR:
iti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101975932 (Dhx38)
Spliceosome [BR:
iti03041
]
Complex C
Other components
Step II factors
101975932 (Dhx38)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
101975932
NCBI-ProteinID:
XP_005318441
UniProt:
I3LWU6
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Position
Unknown
AA seq
1228 aa
AA seq
DB search
MEDTNEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQKDAEEDGDEQAGRSSRKDRHYRSAHVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKEKSRDRGDHDRKRDRDERDRSRHS
SRSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSSYGSSRRSQWESPSPTPSY
RDSERSHRPSTRDRDRSVRSKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRRED
GEEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQK
QKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDG
RIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIM
GVKKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQ
ELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSE
EMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSL
NTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTP
QEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIY
SQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDA
LQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLK
SLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKML
IVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWK
NNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFH
QAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGE
WLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSV
RSTKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccaatgaggatgcctcaatccatcggttagaaggcactgatctggactct
caggttggtggtcttatttgcaagaccaaaagtgcagccagtgagcagcatgtcttcaaa
gcccctgctccccgcccttcattgctgggactggacttgttggcttccctgaaacggagg
gagcgagaagagaaagatgacggggaggacaagaagaagtccagaatctcttcctacaag
gactgggaggagagcaaggatgaccagaaggatgctgaagaggacggtgatgagcaggct
ggccgaagtagccggaaagacagacactatcgatctgctcatgtagagactccatcccat
cctgggggtgtgagtgaagagttttgggaacgtagtcggcagagagagcgggagaggcgg
gaacatggtgtctatgcctcatccaaagaagaaaaggatcggaagaaagagaaatcacgg
gatcgaggagaccatgaccgcaaaagggacagagatgagcgggatagaagtaggcacagc
agcagatcggagcgagatggaggctcagagcgcagcagcagaagaaatgaaccggagagc
ccacggcatcgacctaaagatgcagccactccttcaagatctacctgggaggaggaggac
agtagctatggctcctcaaggcgctctcagtgggagtcaccctccccgacaccttcgtat
cgggattctgagcggagccatcgaccatccactcgagatcgagacaggtctgtgaggagc
aagtactcagacgacacgcctctgccgactccctcctacaaatacaatgaatgggctgat
gacagacgacacctgggttccacgcctcgtctgtccaggggccgaggaagacgtgaggat
ggtgaagaagggatttcatttgacacagaagaggagcggcagcagtgggaggatgaccag
aggcaagctgaccgggactggtacatgatggatgaggggtatgatgagttccacaacccc
ctggcctactcctccgaggactatgtgaggcggcgggagcagcatctacataaacagaag
cagaagcgaatttcggcccagcgcaggcagatcaatgaggataatgagcgctgggagact
aaccgcatgctaaccagtggggtggtccatcggctggaggtggacgaggactttgaagag
gacaacgcagccaaagtacacctgatggttcacaacctggtgcctccctttctggatgga
cgcattgtcttcaccaagcagccagagcctgtgattccagttaaggatgctacttctgac
ctggccatcattgctcggaaaggcagccaaacagtgcggaaacacagggagcaaaaggag
cgcaaaaaggctcagcacaaacactgggaactggctgggaccaaactgggagatataatg
ggtgtcaaaaaagaagaagagccagataaagctctgacagaggatggaaaggtggactac
aggacagagcagaagtttgcagaccacatgaagaaaaaaagtgaagccagcagcgagttt
gcaaagaagaagtcaatcctggagcagaggcagtatctgccaatctttgctgtgcagcaa
gagctactcactattatcagggacaacagcatcgtgattgtggttggggagacagggagc
ggcaagaccactcagctgacccagtatttgcatgaagatggttacacagactatgggatg
attgggtgtacccagccccggcgagtggctgccatgtcagtggccaaaagagtcagtgaa
gagatggggggaaaccttggtgaggaggtgggttacgccatccgctttgaagactgcact
tcagaaaacaccctgatcaagtacatgactgatgggatcctgctccgagagtccctccgg
gaagctgacctggatcactatagtgccatcatcatggacgaggcccacgaacgctccctc
aacacggatgtgctctttgggctgctccgggaggttgtggctcgtcgctcagacctcaag
ctcattgttacatcagccactatggatgcagagaaatttgcttccttttttgggaatgtt
cccatcttccacattcctggtcgaaccttccctgtggatatcctcttcagcaagaccccg
caggaggattatgtggaggccgcagtgaagcagtctttgcaggtgcacctctcaggggcc
cctggggacatccttatcttcatgcctggccaagaggatattgaggtgacctcagaccag
attgtggaacacctggaagaactggaaaatgcgcctgctttggctgtgctgcccatctac
tcccagctgccctctgaccttcaggccaaaatcttccagaaggctccagatggcgtccgg
aagtgtattgttgccaccaacattgctgagacatctctgactgttgatggaatcatgttt
gttattgactctggttattgcaaattaaaggtctttaaccccaggattggcatggatgct
ttgcagatctaccccatcagccaggccaacgccaaccagaggtcagggcgagctggcagg
acgggcccaggtcagtgtttcaggttgtacacacagagtgcctataagaatgaactcctg
accaccacggtgcctgagatccagaggaccaacttggccaatgtggtactgctgctcaag
tcccttggggtgcaggacctgctgcagttccacttcatggacccacccccagaagacaac
atgctcaactccatgtatcagctctggatccttggggccctggacaacacaggtggtctt
acatccacagggcggctgatggtggagttccctttggacccagccctgtccaagatgctc
atcgtgtcctgtgacatgggctgtagctctgagatcctgctcattgtgtccatgctctcc
gtcccggccatcttctacaggcccaagggccgagaggaggagagtgatcaaatccgggag
aagtttgcagtccctgagagtgatcatttgacctacctgaatgtttacctgcagtggaaa
aacaataattactccaccatctggtgtaatgaccatttcatccatgccaaggccatgcgg
aaggtcagggaggtgcgggcccaactcaaggacatcatggtgcagcagcggatgagcctg
gcctcatgtggcactgactgggatattgtcaggaagtgtatctgtgctgcctatttccac
caggcagccaagctcaagggaatcggggagtatgtgaatatccgcacagggatgccgtgt
cacttgcaccccaccagctccctctttggaatgggctacaccccggactacatagtgtac
cacgagttggtcatgaccaccaaggagtacatgcagtgtgtgactgctgtagatggagag
tggctggcggagctgggccccatgttctacagcgtgaagcaggcaggcaagtcgcggcag
gagaatcgccgtcgggccaaagaggaagcctctgctatggaagaggaaatggcgctggcc
gaggagcagctgcgagcccggcggcaggagcaggagaagcgtagccccctgggcagtgtc
aggtccacaaagatctacactccaggtcggaaagagcagggggagcctatgacacctcgc
cgcacgccagcccgctttgggttgtga
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integrated database retrieval system
